C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: signal recognition particle 72kDa
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000342756 SRP72-001 ENSG00000174780 9606 + 4:56466915-56503107 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000342756
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000342756 5.488±0.00 7.374±0.00 2.590±0.00 6.692±1.37 4.502±0.07 6.254±1.88 1.546±0.69 3.673±0.83 5.000±0.55 5.790±1.50 1.364±0.56 9.698±3.47 8.682±2.83 11.196±4.75

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008G9 CIL_0008G9_0001 VISTA 4:56396035-56999166
CIL_0001WO CIL_0001WO_0001 CGP 4:56435741-56503680
CIL_0001WL CIL_0001WL_0001 CGP 4:56466915-56524448

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005047 IPI signal recognition particle binding
GO:0005515 IEA protein binding
GO:0005783 IDA endoplasmic reticulum
GO:0005786 IDA signal recognition particle, endoplasmic reticulum targeting
GO:0005829 TAS cytosol
GO:0006412 TAS translation
GO:0006614 TAS:IEA SRP-dependent cotranslational protein targeting to membrane
GO:0008312 IEA 7S RNA binding
GO:0010467 TAS gene expression
GO:0042493 IDA response to drug
GO:0044267 TAS cellular protein metabolic process
GO:0044822 IDA poly(A) RNA binding
GO:0048500 IEA signal recognition particle

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000101087 Srp72-001 protein_coding Mus_musculus 0 2706
ENSMUST00000120550 Srp72-002 protein_coding Mus_musculus 0 1657
ENSMUST00000141873 Srp72-003 retained_intron Mus_musculus 0 935
ENSMUST00000150661 Srp72-005 retained_intron Mus_musculus 0 664
ENSMUST00000132860 Srp72-004 retained_intron Mus_musculus 0 566
ENSMUST00000146167 Srp72-008 retained_intron Mus_musculus 0 366
ENSMUST00000125732 Srp72-007 retained_intron Mus_musculus 0 361
ENSMUST00000144741 Srp72-009 retained_intron Mus_musculus 0 233

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