C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: homeobox A1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000120363 Hoxa1-002 ENSMUSG00000029844 10090 - 6:52155595-52158317 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBreastColonHeartKidneyLiverMuscleOvaryPlacentaTestisENSMUST00000120363
Transcript ID Adipose Bladder Breast Colon Heart Kidney Liver Muscle Ovary Placenta Testis
ENSMUST00000120363 0.252±0.09 0.176±0.01 0.763±0.48 0.259±0.00 0.069±0.03 0.230±0.04 0.137±0.13 0.092±0.03 0.310±0.13 0.361±0.28 0.043±0.02

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007OD CIL_0007OD_0003 UCNEbase 6:51462736-52602127
CIL_0008JP CIL_0008JP_0002 VISTA 6:51557235-52158614
CIL_0008V2 CIL_0008V2_0002 VISTA 6:51578612-52179694
CIL_0003PD CIL_0003PD_0002 CGP 6:51859166-52158317
CIL_0008QL CIL_0008QL_0002 VISTA 6:51878169-52478777
CIL_000911 CIL_000911_0002 VISTA 6:51970433-52571615
CIL_000811 CIL_000811_0002 VISTA 6:52019082-52620287
CIL_00097P CIL_00097P_0002 VISTA 6:52142617-52744529
CIL_0003PE CIL_0003PE_0002 CGP 6:52155590-52164831

Gene Ontology

GO IDEvidence TypeGO Description
GO:0006357 IDA regulation of transcription from RNA polymerase II promoter
GO:0007399 IMP nervous system development
GO:0008045 IGI motor neuron axon guidance
GO:0009653 IGI anatomical structure morphogenesis
GO:0009952 IGI anterior/posterior pattern specification
GO:0021569 IGI rhombomere 3 development
GO:0021570 IGI rhombomere 4 development
GO:0021571 IGI rhombomere 5 development
GO:0021612 IGI facial nerve structural organization
GO:0021754 IMP facial nucleus development
GO:0021953 IMP central nervous system neuron differentiation
GO:0030902 IMP hindbrain development
GO:0042472 IMP inner ear morphogenesis
GO:0045944 IDA positive regulation of transcription from RNA polymerase II promoter
GO:0048646 IGI anatomical structure formation involved in morphogenesis
GO:0071300 IDA cellular response to retinoic acid

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000136415 hoxb1b-001 protein_coding Danio_rerio 1.4013e-45 189
ENST00000317201 HOXA3-002 protein_coding Homo_sapiens 8e-18 97
ENST00000343060 HOXA1-001 protein_coding Homo_sapiens 0 1190
ENST00000355633 HOXA1-002 protein_coding Homo_sapiens 0 1751
ENST00000396352 HOXA3-001 protein_coding Homo_sapiens 1e-17 97
ENST00000612286 HOXA3-201 protein_coding Homo_sapiens 1e-17 97

Loading