C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: high mobility group nucleosomal binding domain 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000344726 HMGN3-001 ENSG00000118418 9606 - 6:79201245-79234689 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonKidneyLiverLungOvaryPlacentaTestisENST00000344726
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Kidney Liver Lung Ovary Placenta Testis
ENST00000344726 3.267±0.00 14.025±0.00 4.630±0.00 9.773±4.18 4.516±2.74 5.593±3.18 11.571±9.69 7.353±0.00 8.873±0.00 17.652±9.69 24.616±7.95 24.269±1.76

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000621 CIL_000621_0002 CGP 6:78935867-79234738
CIL_000626 CIL_000626_0002 CGP 6:79201245-79537458

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000785 IEA chromatin
GO:0005634 IDA:IEA nucleus
GO:0005737 IDA cytoplasm
GO:0008150 ND biological_process
GO:0016568 IEA chromatin modification
GO:0031492 IEA nucleosomal DNA binding
GO:0046966 NAS thyroid hormone receptor binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000162246 Hmgn3-001 protein_coding Mus_musculus 0 996
ENSMUST00000161796 Hmgn3-002 protein_coding Mus_musculus 0 564
ENSMUST00000185315 Hmgn3-003 protein_coding Mus_musculus 0 564
ENSMUST00000189777 Hmgn3-007 processed_transcript Mus_musculus 0 562
ENSMUST00000187193 Hmgn3-006 protein_coding Mus_musculus 0 560
ENSMUST00000190580 Hmgn3-009 retained_intron Mus_musculus 0 538
ENSMUST00000190154 Hmgn3-004 nonsense_mediated_decay Mus_musculus 0 405
ENSMUST00000191105 Hmgn3-005 retained_intron Mus_musculus 0 255

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