C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: nuclear prelamin A recognition factor
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000154047 Narf-002 ENSMUSG00000000056 10090 + 11:121244538-121245448 retained_intron

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBreastColonLiverOvaryENSMUST00000154047
Transcript ID Adrenal Breast Colon Liver Ovary
ENSMUST00000154047 13.131±3.71 10.926±0.00 21.912±4.66 15.406±1.78 13.201±2.09

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00043T CIL_00043T_0003 CGP 11:121222588-121255856
CIL_00054L CIL_00054L_0002 CGP 11:121237253-121309896

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000309794 NARF-001 protein_coding Homo_sapiens 0 422
ENST00000345415 NARF-007 protein_coding Homo_sapiens 0 422
ENST00000374611 NARF-004 nonsense_mediated_decay Homo_sapiens 0 422
ENST00000390006 NARF-006 protein_coding Homo_sapiens 0 422
ENST00000412079 NARF-201 protein_coding Homo_sapiens 0 422
ENST00000457415 NARF-018 protein_coding Homo_sapiens 0 422
ENST00000577410 NARF-016 protein_coding Homo_sapiens 0 422
ENST00000577432 NARF-020 protein_coding Homo_sapiens 5.60519e-45 185
ENST00000577812 NARF-008 retained_intron Homo_sapiens 0 422
ENST00000578082 NARF-021 retained_intron Homo_sapiens 0 422
ENST00000579083 NARF-017 retained_intron Homo_sapiens 0 327
ENST00000580296 NARF-013 protein_coding Homo_sapiens 0 228
ENST00000581202 NARF-005 nonsense_mediated_decay Homo_sapiens 5.60519e-45 185
ENST00000581743 NARF-025 processed_transcript Homo_sapiens 0 422
ENST00000581795 NARF-003 nonsense_mediated_decay Homo_sapiens 0 189
ENST00000582907 NARF-019 nonsense_mediated_decay Homo_sapiens 0 291
ENST00000583181 NARF-011 processed_transcript Homo_sapiens 5e-33 145
ENST00000584192 NARF-012 processed_transcript Homo_sapiens 9.80909e-45 183
ENST00000584411 NARF-014 protein_coding Homo_sapiens 0 235

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