C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: nuclear prelamin A recognition factor
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000103015 Narf-001 ENSMUSG00000000056 10090 + 11:121237253-121255856 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000103015
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000103015 5.503±0.74 3.570±0.76 3.591±1.99 8.708±5.17 6.285±2.54 5.699±1.52 10.398±7.16 7.926±0.89 14.013±11.20 3.875±0.60 12.207±10.88 3.915±1.50 3.679±1.46 1.323±0.41

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00043T CIL_00043T_0003 CGP 11:121222588-121255856
CIL_00054L CIL_00054L_0002 CGP 11:121237253-121309896

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005521 IEA lamin binding
GO:0005634 IEA nucleus
GO:0005638 IEA lamin filament
GO:0008150 ND biological_process
GO:0031981 IEA nuclear lumen

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000309794 NARF-001 protein_coding Homo_sapiens 0 1230
ENST00000345415 NARF-007 protein_coding Homo_sapiens 0 1013
ENST00000374611 NARF-004 nonsense_mediated_decay Homo_sapiens 0 741
ENST00000390006 NARF-006 protein_coding Homo_sapiens 0 1170
ENST00000412079 NARF-201 protein_coding Homo_sapiens 0 737
ENST00000457415 NARF-018 protein_coding Homo_sapiens 0 649
ENST00000577410 NARF-016 protein_coding Homo_sapiens 0 604
ENST00000577432 NARF-020 protein_coding Homo_sapiens 0 403
ENST00000577812 NARF-008 retained_intron Homo_sapiens 0 797
ENST00000578082 NARF-021 retained_intron Homo_sapiens 0 431
ENST00000579083 NARF-017 retained_intron Homo_sapiens 0 318
ENST00000580296 NARF-013 protein_coding Homo_sapiens 0 385
ENST00000581202 NARF-005 nonsense_mediated_decay Homo_sapiens 0 403
ENST00000581743 NARF-025 processed_transcript Homo_sapiens 0 649
ENST00000581795 NARF-003 nonsense_mediated_decay Homo_sapiens 0 407
ENST00000582907 NARF-019 nonsense_mediated_decay Homo_sapiens 0 675
ENST00000583181 NARF-011 processed_transcript Homo_sapiens 5e-33 145
ENST00000584192 NARF-012 processed_transcript Homo_sapiens 9.80909e-45 183
ENST00000584411 NARF-014 protein_coding Homo_sapiens 0 407

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