C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: AT rich interactive domain 3B (BRIGHT-like)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000346246 ARID3B-001 ENSG00000179361 9606 + 15:74541177-74598131 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainColonLiverLungMuscleOvaryPlacentaTestisENST00000346246
Transcript ID Adipose Adrenal Brain Colon Liver Lung Muscle Ovary Placenta Testis
ENST00000346246 0.759±0.00 0.883±0.00 0.089±0.00 0.271±0.00 0.463±0.00 0.245±0.00 0.088±0.00 1.827±1.48 9.231±1.63 9.972±0.32

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007UD CIL_0007UD_0001 VISTA 15:74278506-74880453

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000978 IEA RNA polymerase II core promoter proximal region sequence-specific DNA binding
GO:0000980 IEA RNA polymerase II distal enhancer sequence-specific DNA binding
GO:0001077 IEA RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription
GO:0001205 IEA RNA polymerase II distal enhancer sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription
GO:0003677 NAS:IEA DNA binding
GO:0005622 IEA intracellular
GO:0005634 IEA:IDA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0008150 ND biological_process
GO:0045944 IEA positive regulation of transcription from RNA polymerase II promoter

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000098686 Arid3b-002 protein_coding Mus_musculus 0 1332
ENSMUST00000004780 Arid3b-201 protein_coding Mus_musculus 0 1275
ENSMUST00000171444 Arid3b-001 protein_coding Mus_musculus 0 1273
ENSMUST00000164035 Arid3b-003 nonsense_mediated_decay Mus_musculus 0 813
ENSMUST00000164010 Arid3b-006 protein_coding Mus_musculus 0 804
ENSMUST00000114165 Arid3b-005 nonsense_mediated_decay Mus_musculus 0 789
ENSMUST00000167670 Arid3b-004 retained_intron Mus_musculus 0 721
ENSMUST00000171949 Arid3b-009 protein_coding Mus_musculus 0 435
ENSDART00000103470 arid3b-201 protein_coding Danio_rerio 0 359
ENSMUST00000170477 Arid3b-007 protein_coding Mus_musculus 0 198

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