C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ATR interacting protein
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000346691 ATRIP-002 ENSG00000164053 9606 + 3:48446733-48465655 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainHeartLiverLungMuscleOvaryTestisENST00000346691
Transcript ID Brain Heart Liver Lung Muscle Ovary Testis
ENST00000346691 0.973±0.00 0.161±0.00 0.848±0.00 0.596±0.50 1.540±0.00 0.989±0.79 2.360±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007U6 CIL_0007U6_0001 VISTA 3:47843366-48458182
CIL_0002UL CIL_0002UL_0001 CGP 3:48446710-48467645

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000077 TAS DNA damage checkpoint
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005654 TAS nucleoplasm
GO:0006260 TAS DNA replication
GO:0006281 IEA DNA repair
GO:0015630 IDA microtubule cytoskeleton
GO:0070530 IDA K63-linked polyubiquitin binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000161521 Atrip-004 protein_coding Mus_musculus 0 1903
ENSMUST00000045011 Atrip-001 protein_coding Mus_musculus 0 1531
ENSMUST00000160928 Atrip-002 nonsense_mediated_decay Mus_musculus 0 1382
ENSMUST00000160217 Atrip-003 nonsense_mediated_decay Mus_musculus 0 1256

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