C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: NDRG family member 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000349004 NDRG3-001 ENSG00000101079 9606 - 20:36651766-36746078 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaENST00000349004
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta
ENST00000349004 4.382±0.00 2.215±0.00 25.183±6.63 4.369±1.09 2.538±0.00 2.860±1.19 3.188±1.68 1.528±1.33 3.427±2.33 0.680±0.48 7.940±2.79 5.979±3.18

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000304 CIL_000304_0002 CGP 20:36612318-36746078
CIL_0000XP CIL_0000XP_0001 CGP 20:36651766-36773818

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005737 IDA cytoplasm
GO:0007283 NAS spermatogenesis
GO:0030154 NAS cell differentiation
GO:0030308 NAS negative regulation of cell growth
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000072298 Ndrg3-001 protein_coding Mus_musculus 0 1851
ENSMUST00000069600 Ndrg3-002 protein_coding Mus_musculus 0 1197
ENSMUST00000109558 Ndrg3-004 protein_coding Mus_musculus 0 924
ENSMUST00000140297 Ndrg3-008 processed_transcript Mus_musculus 0 656
ENSMUST00000156491 Ndrg3-010 processed_transcript Mus_musculus 0 568
ENSMUST00000117381 Gm14278-001 unprocessed_pseudogene Mus_musculus 0 520
ENSMUST00000131955 Ndrg3-005 processed_transcript Mus_musculus 0 501
ENSMUST00000156651 Ndrg3-007 processed_transcript Mus_musculus 0 305
ENSMUST00000149599 Ndrg3-009 processed_transcript Mus_musculus 0 209

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