C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: processing of precursor 1, ribonuclease P/MRP subunit (S. cerevisiae)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000349693 POP1-002 ENSG00000104356 9606 + 8:98117840-98158412 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000349693
Transcript ID Adipose Adrenal Bladder Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000349693 0.350±0.00 0.842±0.00 0.487±0.00 0.319±0.10 0.113±0.00 1.566±0.00 0.679±0.10 0.386±0.04 0.180±0.00 0.635±0.19 0.475±0.08 0.812±0.22

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000684 CIL_000684_0001 CGP 8:98102344-98159834
CIL_0008YL CIL_0008YL_0001 VISTA 8:98116253-98717204
CIL_0003C8 CIL_0003C8_0001 CGP 8:98117297-98294393

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000171 IDA ribonuclease MRP activity
GO:0000172 IDA ribonuclease MRP complex
GO:0001682 IEA tRNA 5'-leader removal
GO:0004526 IEA:IDA ribonuclease P activity
GO:0005515 IPI protein binding
GO:0005615 IDA extracellular space
GO:0005655 IDA nucleolar ribonuclease P complex
GO:0006396 IEA RNA processing
GO:0016078 IDA tRNA catabolic process
GO:0044822 IDA poly(A) RNA binding
GO:0090501 IDA RNA phosphodiester bond hydrolysis
GO:0090502 IEA RNA phosphodiester bond hydrolysis, endonucleolytic

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000079028 Pop1-002 protein_coding Mus_musculus 0 2331
ENSMUST00000052290 Pop1-001 protein_coding Mus_musculus 0 1408
ENSMUST00000132427 Pop1-005 retained_intron Mus_musculus 0 571
ENSMUST00000155073 Pop1-004 processed_transcript Mus_musculus 0 351

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