C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ribosomal protein L7
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000352983 RPL7-001 ENSG00000147604 9606 - 8:73290639-73293898 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000352983
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000352983 221.373±0.00 75.937±0.00 59.695±0.00 67.760±22.77 187.985±39.75 188.645±43.08 49.797±15.62 87.963±9.01 108.695±84.91 114.249±28.94 106.180±0.00 361.670±174.84 147.630±139.01 172.716±6.20

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00011X CIL_00011X_0001 CGP 8:73241329-73295789
CIL_0005C3 CIL_0005C3_0002 CGP 8:73290267-73325281

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000184 TAS nuclear-transcribed mRNA catabolic process, nonsense-mediated decay
GO:0003677 IDA DNA binding
GO:0003723 TAS RNA binding
GO:0003729 IDA mRNA binding
GO:0003735 NAS structural constituent of ribosome
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005829 TAS cytosol
GO:0005925 IDA focal adhesion
GO:0006364 IMP rRNA processing
GO:0006412 NAS translation
GO:0006413 TAS translational initiation
GO:0006414 TAS translational elongation
GO:0006415 TAS translational termination
GO:0006614 TAS SRP-dependent cotranslational protein targeting to membrane
GO:0010467 TAS gene expression
GO:0016020 IDA membrane
GO:0016032 TAS viral process
GO:0016070 TAS RNA metabolic process
GO:0016071 TAS mRNA metabolic process
GO:0019058 TAS viral life cycle
GO:0019083 TAS viral transcription
GO:0022625 IDA cytosolic large ribosomal subunit
GO:0030529 IDA ribonucleoprotein complex
GO:0042273 IMP ribosomal large subunit biogenesis
GO:0042803 IPI protein homodimerization activity
GO:0044267 TAS cellular protein metabolic process
GO:0044822 IDA poly(A) RNA binding
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000058437 Rpl7-001 protein_coding Mus_musculus 0 937
ENSMUST00000119853 Gm12174-001 processed_pseudogene Mus_musculus 0 870
ENSMUST00000027054 Gm5045-201 processed_pseudogene Mus_musculus 0 859
ENSMUST00000118173 Gm6274-001 processed_pseudogene Mus_musculus 0 821
ENSMUST00000118692 Gm12090-001 processed_pseudogene Mus_musculus 0 713
ENSMUST00000118553 Gm8534-001 processed_pseudogene Mus_musculus 0 691
ENSMUST00000152419 1700073E17Rik-002 processed_transcript Mus_musculus 0 684
ENSMUST00000122189 Gm5392-001 processed_pseudogene Mus_musculus 0 645
ENSMUST00000148424 1700073E17Rik-001 transcribed_processed_pseudogene Mus_musculus 0 643
ENSMUST00000117062 Gm15159-001 processed_pseudogene Mus_musculus 0 616
ENSMUST00000141217 Rpl7-002 retained_intron Mus_musculus 0 580
ENSMUST00000136180 1700073E17Rik-004 processed_transcript Mus_musculus 0 532
ENSMUST00000140597 Rpl7-006 processed_transcript Mus_musculus 0 311
ENSMUST00000151017 Rpl7-005 retained_intron Mus_musculus 0 278

Loading