C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: heterogeneous nuclear ribonucleoprotein H3 (2H9)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000354695 HNRNPH3-003 ENSG00000096746 9606 + 10:68332122-68342272 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000354695
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000354695 42.915±0.00 37.063±0.00 30.036±0.00 37.646±0.00 83.341±0.00 20.484±0.00 46.168±0.00 9.620±0.00 55.958±0.00 28.344±0.00 47.957±11.62 25.407±2.22 61.147±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000H3 CIL_0000H3_0002 CGP 10:68282660-68343191
CIL_0000PX CIL_0000PX_0002 CGP 10:68331174-68407294

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0000398 NAS mRNA splicing, via spliceosome
GO:0003676 IEA nucleic acid binding
GO:0003723 NAS RNA binding
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005681 NAS spliceosomal complex
GO:0006396 TAS RNA processing
GO:0008380 TAS RNA splicing
GO:0030855 IEP epithelial cell differentiation
GO:0044822 IDA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000118898 Hnrnph3-002 protein_coding Mus_musculus 0 1799
ENSMUST00000020263 Hnrnph3-001 protein_coding Mus_musculus 0 1066
ENSMUST00000140743 Hnrnph3-003 nonsense_mediated_decay Mus_musculus 0 1064
ENSMUST00000143689 Hnrnph3-005 retained_intron Mus_musculus 0 486
ENSMUST00000141616 Hnrnph3-006 retained_intron Mus_musculus 0 411
ENSDART00000057651 HNRNPH3-201 protein_coding Danio_rerio 0 270
ENSDART00000113082 HNRNPH3-001 protein_coding Danio_rerio 0 270
ENSMUST00000119814 Hnrnph3-004 protein_coding Mus_musculus 0 261
ENSMUST00000069304 Hnrnph1-201 protein_coding Mus_musculus 0 248
ENSMUST00000134230 Hnrnph1-009 processed_transcript Mus_musculus 0 248
ENSMUST00000077817 Hnrnph1-006 protein_coding Mus_musculus 0 248
ENSMUST00000127964 Hnrnph1-010 processed_transcript Mus_musculus 0 248
ENSMUST00000109142 Hnrnph1-005 protein_coding Mus_musculus 0 248
ENSDART00000059918 hnrnph1-201 protein_coding Danio_rerio 0 246
ENSDART00000015636 hnrnph1l-001 protein_coding Danio_rerio 0 237
ENSMUST00000133435 Hnrnph1-013 processed_transcript Mus_musculus 0 235
ENSMUST00000123371 Hnrnph1-008 processed_transcript Mus_musculus 0 195
ENSMUST00000126737 Hnrnph1-007 processed_transcript Mus_musculus 0 195
ENSMUST00000143594 Rufy2-002 nonsense_mediated_decay Mus_musculus 2e-40 171

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