C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: fragile X mental retardation, autosomal homolog 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000357559 FXR1-001 ENSG00000114416 9606 + 3:180912302-180982753 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalHeartKidneyLiverLungOvaryENST00000357559
Transcript ID Adrenal Heart Kidney Liver Lung Ovary
ENST00000357559 1.147±0.00 0.797±0.00 1.043±0.00 1.986±0.00 2.008±0.00 1.236±0.05

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00081N CIL_00081N_0001 VISTA 3:180418639-181020170
CIL_00081O CIL_00081O_0001 VISTA 3:180444037-181045086
CIL_0001FQ CIL_0001FQ_0001 CGP 3:180602130-180871005
CIL_0001FR CIL_0001FR_0001 CGP 3:180602858-180982753
CIL_0007MF CIL_0007MF_0001 UCNEbase 3:180719005-182597004
CIL_0008UV CIL_0008UV_0001 VISTA 3:180755851-181358014

Gene Ontology

GO IDEvidence TypeGO Description
GO:0002151 IEA G-quadruplex RNA binding
GO:0003676 IEA nucleic acid binding
GO:0003723 TAS:IEA RNA binding
GO:0003730 IEA mRNA 3'-UTR binding
GO:0005515 IEA protein binding
GO:0005634 IEA nucleus
GO:0005730 TAS nucleolus
GO:0005737 IDA cytoplasm
GO:0005844 IEA polysome
GO:0006915 TAS apoptotic process
GO:0007517 IEA muscle organ development
GO:0016020 IDA membrane
GO:0017148 IEA negative regulation of translation
GO:0030154 IEA cell differentiation
GO:0043034 IEA costamere
GO:0044822 IDA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000167354 Fxr1-202 protein_coding Mus_musculus 0 2564
ENSMUST00000001620 Fxr1-201 protein_coding Mus_musculus 0 1803

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