C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0001FR_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000145075-ENSG00000114416 CGP 9606 3:180602858-180982753
GeneTranscriptPositionBiotype
ENSG00000114416 (FXR1)
fragile X mental retardation, autosomal homolog 1 		ENST00000305586 (FXR1-007) 180912482-180977155 protein_coding
ENST00000357559 (FXR1-001) 180912302-180982753 protein_coding
ENST00000445140 (FXR1-005) 180912672-180977155 protein_coding
ENST00000461044 (FXR1-016) 180957527-180963081 retained_intron
ENST00000461801 (FXR1-020) 180933036-180935196 retained_intron
ENST00000465551 (FXR1-013) 180868751-180949250 protein_coding
ENST00000468861 (FXR1-004) 180912671-180976545 protein_coding
ENST00000469882 (FXR1-015) 180868141-180949326 protein_coding
ENST00000472339 (FXR1-006) 180912678-180976553 retained_intron
ENST00000473375 (FXR1-021) 180951330-180954105 retained_intron
ENST00000475315 (FXR1-002) 180912491-180976579 retained_intron
ENST00000476672 (FXR1-018) 180957869-180970661 retained_intron
ENST00000479176 (FXR1-010) 180912671-180948192 retained_intron
ENST00000480918 (FXR1-008) 180915434-180976378 protein_coding
ENST00000481383 (FXR1-022) 180970192-180971816 retained_intron
ENST00000482125 (FXR1-019) 180968051-180976282 protein_coding
ENST00000484042 (FXR1-012) 180915460-180948742 protein_coding
ENST00000484790 (FXR1-014) 180868156-180948783 protein_coding
ENST00000484958 (FXR1-011) 180912685-180949339 protein_coding
ENST00000491062 (FXR1-003) 180912671-180976418 protein_coding
ENST00000491674 (FXR1-009) 180912538-180927813 protein_coding
ENST00000498658 (FXR1-017) 180957809-180968405 retained_intron
ENSG00000145075 (CCDC39)
coiled-coil domain containing 39 		ENST00000442201 (CCDC39-001) 180614588-180679500 protein_coding
ENST00000471307 (CCDC39-003) 180661872-180870933 protein_coding
ENST00000473854 (CCDC39-006) 180602858-180616652 protein_coding
ENST00000476379 (CCDC39-002) 180614008-180737874 nonsense_mediated_decay
ENST00000485055 (CCDC39-004) 180707589-180870178 processed_transcript
ENST00000489868 (CCDC39-007) 180609503-180616617 protein_coding
ENST00000495817 (CCDC39-005) 180708326-180871005 processed_transcript
ENSG00000163728 (TTC14)
tetratricopeptide repeat domain 14 		ENST00000296015 (TTC14-001) 180602130-180610978 protein_coding
ENST00000382584 (TTC14-005) 180602211-180617828 protein_coding
ENST00000412756 (TTC14-002) 180602193-180610974 protein_coding
ENST00000462895 (TTC14-007) 180602217-180604912 nonsense_mediated_decay
ENST00000465065 (TTC14-003) 180602195-180610974 nonsense_mediated_decay
ENST00000465625 (TTC14-010) 180608163-180610168 processed_transcript
ENST00000470669 (TTC14-004) 180602211-180610003 nonsense_mediated_decay
ENST00000487397 (TTC14-012) 180609871-180610980 processed_transcript
ENST00000491380 (TTC14-006) 180602189-180604160 protein_coding
ENST00000492617 (TTC14-008) 180602506-180605007 protein_coding
ENST00000495660 (TTC14-009) 180602562-180604607 protein_coding
ENSG00000213157 (RP11-259P15.1)
 ENST00000439549 (RP11-259P15.1-001) 180887677-180888075 processed_pseudogene
ENSG00000239516 (FLYWCH1P1)
FLYWCH-type zinc finger 1 pseudogene 1 		ENST00000460917 (FLYWCH1P1-001) 180827977-180829850 processed_pseudogene
ENSG00000241473 (RP11-259P15.3)
 ENST00000420887 (RP11-259P15.3-001) 180820544-180821612 processed_pseudogene
ENSG00000242068 (RP11-259P15.4)
 ENST00000481241 (RP11-259P15.4-001) 180772750-180773914 processed_pseudogene
ENSG00000242811 (RN7SL229P)
RNA, 7SL, cytoplasmic 229, pseudogene 		ENST00000495651 (RN7SL229P-201) 180736405-180736703 misc_RNA
ENSG00000243187 (CCDC39-AS1)
CCDC39 antisense RNA 1 		ENST00000495357 (CCDC39-AS1-001) 180680084-180700449 antisense

Homo sapiens Ensembl (GRCh38)

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Structures from Ensembl
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Transcripts
Structures from Ensembl
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CIL_0001FR_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000027676-ENSMUSG00000027680 CGP 10090 3:33812362-34069342
GeneTranscriptPositionBiotype
ENSMUSG00000027676 (Ccdc39)
coiled-coil domain containing 39 		ENSMUST00000029222 (Ccdc39-001) 33812362-33844301 protein_coding
ENSMUST00000125845 (Ccdc39-003) 33818648-33844301 retained_intron
ENSMUST00000127844 (Ccdc39-004) 33820187-33844075 processed_transcript
ENSMUST00000135728 (Ccdc39-002) 33837994-33844310 retained_intron
ENSMUST00000154577 (Ccdc39-005) 33824962-33826540 retained_intron
ENSMUSG00000027677 (Ttc14)
tetratricopeptide repeat domain 14 		ENSMUST00000076916 (Ttc14-002) 33800191-33807708 protein_coding
ENSMUST00000099153 (Ttc14-001) 33799955-33814860 protein_coding
ENSMUST00000108210 (Ttc14-008) 33800251-33809944 protein_coding
ENSMUST00000117915 (Ttc14-005) 33800213-33812291 protein_coding
ENSMUST00000127513 (Ttc14-007) 33801214-33808031 nonsense_mediated_decay
ENSMUST00000139880 (Ttc14-003) 33800191-33802934 protein_coding
ENSMUST00000142280 (Ttc14-004) 33800210-33807899 protein_coding
ENSMUST00000150294 (Ttc14-006) 33800213-33809677 nonsense_mediated_decay
ENSMUSG00000027679 (Dnajc19)
DnaJ (Hsp40) homolog, subfamily C, member 19 		ENSMUST00000011029 (Dnajc19-001) 34056020-34081312 protein_coding
ENSMUST00000108195 (Dnajc19-002) 34077285-34081321 protein_coding
ENSMUST00000117223 (Dnajc19-003) 34077434-34081262 protein_coding
ENSMUST00000120805 (Dnajc19-004) 34077324-34081310 protein_coding
ENSMUSG00000027680 (Fxr1)
fragile X mental retardation gene 1, autosomal homolog 		ENSMUST00000001620 (Fxr1-201) 34020079-34069342 protein_coding
ENSMUST00000167354 (Fxr1-202) 34020079-34069342 protein_coding
ENSMUSG00000044434 (Gm9791)
predicted pseudogene 9791 		ENSMUST00000060997 (Gm9791-001) 34005017-34005463 processed_pseudogene

Mus musculus Ensembl (GRCm38)

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Structures from Ensembl
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Transcripts
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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestis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
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0001FR_0001ENSG00000114416ENST00000305586ENST00000357559ENST00000445140ENST00000468861ENST00000472339ENST00000475315ENST00000476672ENST00000480918ENST00000482125ENST00000491062ENST00000498658ENSG00000145075ENST00000442201ENSG00000163728ENST00000296015ENST00000382584ENST00000412756ENST00000465065ENST00000465625ENST00000491380ENSG00000213157ENST00000439549ENSG00000239516ENST00000460917ENSG00000241473ENST00000420887ENSG00000242068ENST00000481241ENSG00000242811ENST00000495651ENSG00000243187ENST00000495357CIL_0001FR_0002ENSMUSG00000027676ENSMUST00000029222ENSMUSG00000027677ENSMUST00000076916ENSMUST00000099153ENSMUST00000108210ENSMUST00000117915ENSMUST00000127513ENSMUST00000139880ENSMUST00000142280ENSMUST00000150294ENSMUSG00000027679ENSMUST00000011029ENSMUST00000108195ENSMUSG00000027680ENSMUST00000001620ENSMUST00000167354ENSMUSG00000044434ENSMUST00000060997
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000114416 ENST00000305586 N/A N/A N/A 1.704±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000357559 N/A 1.147±0.00 N/A N/A N/A N/A 0.797±0.00 1.043±0.00 1.986±0.00 2.008±0.00 N/A 1.236±0.05 N/A N/A
ENST00000445140 6.699±0.00 4.896±0.00 N/A 6.765±0.00 9.592±0.00 14.713±0.00 10.080±6.95 5.909±0.00 4.180±1.61 11.236±0.00 40.187±29.04 8.471±4.33 8.985±0.63 19.742±0.00
ENST00000461044 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000461801 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000465551 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000468861 N/A N/A N/A N/A N/A N/A N/A N/A 3.360±0.00 13.659±0.00 N/A N/A N/A N/A
ENST00000469882 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000472339 8.644±0.00 N/A 6.649±0.00 5.373±1.79 9.388±0.23 4.201±0.00 12.274±7.08 5.656±0.82 6.072±2.98 7.577±0.00 38.212±20.36 8.803±2.36 8.799±3.11 N/A
ENST00000473375 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000475315 5.546±0.00 6.853±0.00 N/A N/A 9.690±0.00 14.658±0.00 N/A 5.165±0.00 N/A 6.910±0.00 N/A 8.041±0.92 N/A 45.509±9.33
ENST00000476672 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 15.479±0.00 N/A N/A
ENST00000479176 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000480918 N/A N/A 2.861±0.00 N/A N/A 2.999±0.00 N/A 3.614±0.00 N/A N/A N/A 4.572±0.00 N/A 64.225±0.00
ENST00000481383 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000482125 N/A N/A N/A N/A N/A N/A 23.354±13.59 N/A N/A N/A 95.207±53.75 N/A N/A N/A
ENST00000484042 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000484790 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000484958 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000491062 20.092±0.00 10.416±0.00 N/A 16.485±0.00 15.753±0.00 16.068±12.23 N/A 11.452±0.00 N/A N/A N/A 14.484±1.59 10.824±3.24 46.473±0.00
ENST00000491674 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000498658 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 42.399±0.00 50.014±0.00 305.274±0.00
ENSG00000145075 ENST00000442201 N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.028±0.00 N/A N/A N/A 1.108±0.00
ENST00000471307 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000473854 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000476379 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000485055 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000489868 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000495817 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000163728 ENST00000296015 1.257±0.00 2.332±0.00 N/A 1.493±0.17 2.570±0.69 1.909±0.00 1.603±0.00 2.912±1.73 0.975±0.00 1.505±0.00 N/A 5.290±0.70 1.701±1.00 5.621±2.88
ENST00000382584 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.289±0.07 2.804±0.00 N/A 1.618±0.00
ENST00000412756 0.496±0.00 1.408±0.00 2.221±0.00 2.075±1.24 2.530±0.00 1.262±0.66 0.556±0.14 0.619±0.00 1.831±1.31 3.617±2.63 0.216±0.00 3.431±1.62 0.542±0.11 6.230±0.00
ENST00000462895 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000465065 N/A N/A 0.919±0.00 N/A 1.046±0.00 0.918±0.00 0.294±0.00 0.509±0.00 N/A 2.813±0.00 N/A 1.328±0.00 N/A N/A
ENST00000465625 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.765±0.00 N/A N/A N/A
ENST00000470669 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000487397 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000491380 N/A N/A N/A N/A N/A N/A N/A N/A 13.373±0.00 N/A 1.378±0.00 N/A N/A N/A
ENST00000492617 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000495660 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000213157 ENST00000439549 0.152±0.00 0.122±0.00 N/A 0.042±0.00 0.289±0.00 0.115±0.00 0.035±0.00 0.041±0.00 0.143±0.00 N/A 0.103±0.00 0.642±0.00 N/A 0.181±0.11
ENSG00000239516 ENST00000460917 0.017±0.00 N/A N/A 0.024±0.00 N/A N/A N/A N/A 0.220±0.00 N/A 0.016±0.00 N/A N/A N/A
ENSG00000241473 ENST00000420887 0.037±0.00 0.020±0.00 N/A 0.046±0.00 N/A 0.060±0.00 0.096±0.00 0.021±0.00 0.041±0.02 0.058±0.00 N/A 0.067±0.01 N/A N/A
ENSG00000242068 ENST00000481241 N/A N/A N/A 0.025±0.00 N/A 0.355±0.00 0.082±0.05 0.073±0.00 0.465±0.32 0.102±0.05 0.621±0.00 0.312±0.47 0.042±0.00 0.033±0.01
ENSG00000242811 ENST00000495651 N/A N/A N/A N/A N/A N/A 0.059±0.00 0.442±0.00 N/A N/A N/A 1.994±0.00 N/A N/A
ENSG00000243187 ENST00000495357 N/A 0.159±0.00 N/A N/A N/A N/A 0.034±0.00 N/A N/A N/A N/A N/A N/A 0.133±0.03
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000027676 ENSMUST00000029222 N/A N/A N/A 7.946±1.33 N/A N/A N/A N/A N/A 2.871±0.00 N/A 6.599±0.94 N/A 34.549±5.29
ENSMUST00000125845 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000127844 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000135728 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000154577 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000027677 ENSMUST00000076916 4.796±2.11 8.151±2.27 N/A N/A 4.721±1.66 2.566±0.53 3.371±0.41 1.535±0.22 1.678±1.25 5.095±0.77 N/A 5.559±1.31 N/A N/A
ENSMUST00000099153 2.128±1.28 3.784±0.76 6.892±0.89 5.850±2.70 1.572±0.89 1.531±0.47 0.798±0.23 1.131±0.16 1.931±1.52 2.985±0.84 0.584±0.28 3.788±1.74 1.889±1.09 N/A
ENSMUST00000108210 N/A N/A 9.913±0.74 N/A N/A N/A N/A N/A 4.991±0.87 N/A 1.657±0.34 10.126±0.20 6.739±1.13 N/A
ENSMUST00000117915 2.022±0.73 N/A N/A 3.282±0.00 2.045±0.29 1.547±0.09 0.642±0.01 0.904±0.15 1.127±0.34 2.455±0.00 0.763±0.24 2.114±0.00 N/A N/A
ENSMUST00000127513 N/A N/A N/A 9.068±0.00 N/A N/A N/A N/A N/A N/A N/A 7.183±0.00 3.975±0.07 N/A
ENSMUST00000139880 N/A 49.024±12.09 N/A N/A 14.307±7.17 9.468±0.93 N/A 4.883±0.00 2.301±0.60 16.602±5.28 N/A 24.322±12.93 N/A N/A
ENSMUST00000142280 N/A N/A N/A N/A 5.065±0.64 4.720±1.47 N/A 2.017±0.00 1.461±0.00 8.151±0.00 N/A 8.651±2.26 N/A N/A
ENSMUST00000150294 N/A N/A N/A 4.567±0.00 N/A N/A N/A N/A N/A N/A 1.215±0.00 4.444±0.00 3.548±0.43 N/A
ENSMUSG00000027679 ENSMUST00000011029 2.833±0.00 N/A 4.275±0.43 N/A 3.393±0.64 N/A N/A 7.829±1.78 N/A 4.322±0.47 N/A N/A N/A N/A
ENSMUST00000108195 63.806±7.90 233.341±25.60 37.861±5.32 35.188±8.05 97.837±23.73 88.172±22.16 80.429±19.01 151.429±39.21 114.574±48.69 77.133±19.27 N/A 113.848±40.09 67.899±1.86 N/A
ENSMUST00000117223 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000120805 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000027680 ENSMUST00000001620 N/A N/A 6.612±0.01 6.334±1.23 8.502±0.44 N/A 15.687±2.34 N/A 6.416±0.58 5.051±0.00 84.635±6.42 8.643±0.70 7.931±0.23 56.203±24.66
ENSMUST00000167354 14.080±3.11 N/A 17.893±1.14 22.819±5.88 8.266±1.53 7.164±0.99 N/A 10.984±0.96 17.690±7.04 11.206±0.76 29.146±9.32 26.589±27.40 65.803±35.66 130.113±91.79
ENSMUSG00000044434 ENSMUST00000060997 0.625±0.43 11.355±2.77 0.033±0.00 8.565±11.98 0.548±0.16 1.206±0.73 0.115±0.02 0.189±0.09 2.110±2.31 0.478±0.36 N/A 0.750±0.50 0.131±0.07 30.600±58.14

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