C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: fragile X mental retardation gene 1, autosomal homolog
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000001620 Fxr1-201 ENSMUSG00000027680 10090 + 3:34020079-34069342 protein_coding

Mus musculus EnsemblGRCm38

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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainBreastHeartLiverLungMuscleOvaryPlacentaTestisENSMUST00000001620
Transcript ID Bladder Brain Breast Heart Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000001620 6.612±0.01 6.334±1.23 8.502±0.44 15.687±2.34 6.416±0.58 5.051±0.00 84.635±6.42 8.643±0.70 7.931±0.23 56.203±24.66

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00081N CIL_00081N_0002 VISTA 3:33582396-34183856
CIL_00081O CIL_00081O_0002 VISTA 3:33605209-34206178
CIL_0008UV CIL_0008UV_0002 VISTA 3:33803627-34405807
CIL_0001FR CIL_0001FR_0002 CGP 3:33812362-34069342
CIL_0007MF CIL_0007MF_0002 UCNEbase 3:33882710-35464507

Gene Ontology

GO IDEvidence TypeGO Description
GO:0002151 IDA G-quadruplex RNA binding
GO:0003730 IDA mRNA 3'-UTR binding
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005737 IDA cytoplasm
GO:0005844 IDA polysome
GO:0007517 IMP muscle organ development
GO:0016020 IEA membrane
GO:0017148 IDA negative regulation of translation
GO:0030154 IEA cell differentiation
GO:0043034 IDA costamere
GO:0044822 IEA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000305586 FXR1-007 protein_coding Homo_sapiens 0 1661
ENST00000357559 FXR1-001 protein_coding Homo_sapiens 0 1803
ENST00000445140 FXR1-005 protein_coding Homo_sapiens 0 1772
ENST00000461044 FXR1-016 retained_intron Homo_sapiens 0 377
ENST00000461801 FXR1-020 retained_intron Homo_sapiens 3.9937e-43 178
ENST00000465551 FXR1-013 protein_coding Homo_sapiens 0 774
ENST00000468861 FXR1-004 protein_coding Homo_sapiens 0 1576
ENST00000469882 FXR1-015 protein_coding Homo_sapiens 0 654
ENST00000472339 FXR1-006 retained_intron Homo_sapiens 0 2676
ENST00000473375 FXR1-021 retained_intron Homo_sapiens 0 309
ENST00000475315 FXR1-002 retained_intron Homo_sapiens 0 2335
ENST00000476672 FXR1-018 retained_intron Homo_sapiens 0 767
ENST00000479176 FXR1-010 retained_intron Homo_sapiens 0 470
ENST00000480918 FXR1-008 protein_coding Homo_sapiens 0 1661
ENST00000481383 FXR1-022 retained_intron Homo_sapiens 0 414
ENST00000482125 FXR1-019 protein_coding Homo_sapiens 0 1205
ENST00000484042 FXR1-012 protein_coding Homo_sapiens 0 630
ENST00000484790 FXR1-014 protein_coding Homo_sapiens 0 702
ENST00000484958 FXR1-011 protein_coding Homo_sapiens 0 678
ENST00000491062 FXR1-003 protein_coding Homo_sapiens 0 1423
ENST00000491674 FXR1-009 protein_coding Homo_sapiens 3e-34 148
ENST00000498658 FXR1-017 retained_intron Homo_sapiens 0 435
ENST00000547729 RP11-328C8.2-001 processed_pseudogene Homo_sapiens 0 442

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