C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: fragile X mental retardation gene 1, autosomal homolog
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000167354 Fxr1-202 ENSMUSG00000027680 10090 + 3:34020079-34069342 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastColonKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000167354
Transcript ID Adipose Bladder Brain Breast Colon Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000167354 14.080±3.11 17.893±1.14 22.819±5.88 8.266±1.53 7.164±0.99 10.984±0.96 17.690±7.04 11.206±0.76 29.146±9.32 26.589±27.40 65.803±35.66 130.113±91.79

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00081N CIL_00081N_0002 VISTA 3:33582396-34183856
CIL_00081O CIL_00081O_0002 VISTA 3:33605209-34206178
CIL_0008UV CIL_0008UV_0002 VISTA 3:33803627-34405807
CIL_0001FR CIL_0001FR_0002 CGP 3:33812362-34069342
CIL_0007MF CIL_0007MF_0002 UCNEbase 3:33882710-35464507

Gene Ontology

GO IDEvidence TypeGO Description
GO:0002151 IDA G-quadruplex RNA binding
GO:0003730 IDA mRNA 3'-UTR binding
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005737 IDA cytoplasm
GO:0005844 IDA polysome
GO:0007517 IMP muscle organ development
GO:0017148 IDA negative regulation of translation
GO:0030154 IEA cell differentiation
GO:0043034 IDA costamere

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000305586 FXR1-007 protein_coding Homo_sapiens 0 2422
ENST00000357559 FXR1-001 protein_coding Homo_sapiens 0 2564
ENST00000445140 FXR1-005 protein_coding Homo_sapiens 0 3210
ENST00000461044 FXR1-016 retained_intron Homo_sapiens 0 462
ENST00000461801 FXR1-020 retained_intron Homo_sapiens 3.9937e-43 178
ENST00000465551 FXR1-013 protein_coding Homo_sapiens 0 774
ENST00000468861 FXR1-004 protein_coding Homo_sapiens 0 3005
ENST00000469882 FXR1-015 protein_coding Homo_sapiens 0 654
ENST00000472339 FXR1-006 retained_intron Homo_sapiens 0 1760
ENST00000473375 FXR1-021 retained_intron Homo_sapiens 0 309
ENST00000475315 FXR1-002 retained_intron Homo_sapiens 0 1419
ENST00000476672 FXR1-018 retained_intron Homo_sapiens 0 1051
ENST00000479176 FXR1-010 retained_intron Homo_sapiens 0 470
ENST00000480918 FXR1-008 protein_coding Homo_sapiens 0 2422
ENST00000481383 FXR1-022 retained_intron Homo_sapiens 0 270
ENST00000482125 FXR1-019 protein_coding Homo_sapiens 0 660
ENST00000484042 FXR1-012 protein_coding Homo_sapiens 0 630
ENST00000484790 FXR1-014 protein_coding Homo_sapiens 0 702
ENST00000484958 FXR1-011 protein_coding Homo_sapiens 0 678
ENST00000491062 FXR1-003 protein_coding Homo_sapiens 0 2636
ENST00000491674 FXR1-009 protein_coding Homo_sapiens 3e-34 148
ENST00000498658 FXR1-017 retained_intron Homo_sapiens 0 806
ENST00000547729 RP11-328C8.2-001 processed_pseudogene Homo_sapiens 0 444

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