C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: GDP-mannose pyrophosphorylase A
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000358215 GMPPA-003 ENSG00000144591 9606 + 2:219498901-219506988 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBrainBreastColonHeartOvaryPlacentaTestisENST00000358215
Transcript ID Adipose Brain Breast Colon Heart Ovary Placenta Testis
ENST00000358215 2.560±0.00 1.142±0.00 2.783±0.00 3.408±0.00 1.724±0.00 4.604±1.32 2.324±0.00 3.771±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000916 CIL_000916_0001 VISTA 2:219106772-219707284
CIL_0006O1 CIL_0006O1_0001 CGP 2:219434846-219506988
CIL_000415 CIL_000415_0002 CGP 2:219498867-219538772

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005737 IEA cytoplasm
GO:0006488 TAS dolichol-linked oligosaccharide biosynthetic process
GO:0009058 IEA biosynthetic process
GO:0009298 TAS GDP-mannose biosynthetic process
GO:0016779 IEA nucleotidyltransferase activity
GO:0018279 TAS protein N-linked glycosylation via asparagine
GO:0043687 TAS post-translational protein modification
GO:0044267 TAS cellular protein metabolic process
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000113584 Gmppa-002 protein_coding Mus_musculus 0 1676
ENSMUST00000037796 Gmppa-001 protein_coding Mus_musculus 0 1624
ENSMUST00000133418 Gmppa-005 protein_coding Mus_musculus 0 920
ENSMUST00000131545 Gmppa-008 protein_coding Mus_musculus 0 881
ENSMUST00000144874 Gmppa-012 protein_coding Mus_musculus 0 859
ENSMUST00000143730 Gmppa-006 protein_coding Mus_musculus 0 798
ENSMUST00000140287 Gmppa-007 protein_coding Mus_musculus 0 741
ENSMUST00000188097 Gmppa-013 nonsense_mediated_decay Mus_musculus 0 616
ENSMUST00000145166 Gmppa-003 protein_coding Mus_musculus 0 470

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