C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: myoferlin
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000041475 Myof-201 ENSMUSG00000048612 10090 - 19:37899036-38043577 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000041475
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000041475 5.176±2.03 0.931±0.43 43.729±11.96 0.333±0.18 3.090±0.80 3.991±1.70 0.573±0.21 4.295±0.96 0.499±0.70 12.562±0.28 0.556±0.21 7.828±8.08 29.851±21.38 0.291±0.10

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000ZY CIL_0000ZY_0002 CGP 19:37697808-38043577
CIL_0000ZZ CIL_0000ZZ_0002 CGP 19:37899036-38074425

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001778 IMP plasma membrane repair
GO:0005543 IMP phospholipid binding
GO:0005634 IEA nucleus
GO:0005886 IEA plasma membrane
GO:0005901 IDA caveola
GO:0016021 IEA integral component of membrane
GO:0030947 IMP regulation of vascular endothelial growth factor receptor signaling pathway
GO:0031410 IEA cytoplasmic vesicle
GO:0034605 IDA cellular response to heat
GO:0043231 IEA intracellular membrane-bounded organelle
GO:0070062 IEA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000358334 MYOF-004 protein_coding Homo_sapiens 0 7552
ENST00000359263 MYOF-005 protein_coding Homo_sapiens 0 5840
ENST00000371488 MYOF-002 protein_coding Homo_sapiens 0 556
ENST00000371489 MYOF-003 protein_coding Homo_sapiens 0 1642
ENST00000463743 MYOF-006 nonsense_mediated_decay Homo_sapiens 0 2987
ENST00000475358 MYOF-007 processed_transcript Homo_sapiens 4e-39 165
ENST00000485212 MYOF-008 processed_transcript Homo_sapiens 0 433
ENST00000488645 MYOF-001 processed_transcript Homo_sapiens 0 435

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