C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: calcium channel, voltage-dependent, R type, alpha 1E subunit
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000358338 CACNA1E-202 ENSG00000198216 9606 + 1:181483745-181806778 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainColonHeartLungOvaryENST00000358338
Transcript ID Adipose Adrenal Bladder Brain Colon Heart Lung Ovary
ENST00000358338 0.006±0.00 0.013±0.00 0.090±0.00 2.259±0.00 0.042±0.02 0.009±0.00 0.008±0.00 0.007±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007W1 CIL_0007W1_0001 VISTA 1:180851913-181454518

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005216 IEA ion channel activity
GO:0005245 IEA:IDA voltage-gated calcium channel activity
GO:0005509 IEA calcium ion binding
GO:0005886 IBA plasma membrane
GO:0005891 IEA voltage-gated calcium channel complex
GO:0006112 TAS energy reserve metabolic process
GO:0006810 TAS transport
GO:0006811 IEA ion transport
GO:0007268 IBA synaptic transmission
GO:0008331 IBA high voltage-gated calcium channel activity
GO:0016020 IEA membrane
GO:0034765 IEA regulation of ion transmembrane transport
GO:0044281 TAS small molecule metabolic process
GO:0050796 TAS regulation of insulin secretion
GO:0051899 TAS membrane depolarization
GO:0055085 IEA transmembrane transport
GO:0070509 IBA calcium ion import
GO:0070588 IEA calcium ion transmembrane transport
GO:0086010 IBA membrane depolarization during action potential

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000187541 Cacna1e-001 protein_coding Mus_musculus 0 6189
ENSMUST00000004214 Cacna1e-201 protein_coding Mus_musculus 0 6156
ENSMUST00000188965 Cacna1e-002 retained_intron Mus_musculus 0 1973
ENSDART00000134656 CACNA1E (2 of 2)-001 protein_coding Danio_rerio 0 1205
ENSMUST00000188384 Cacna1e-004 retained_intron Mus_musculus 0 965
ENSMUST00000188321 Cacna1e-003 retained_intron Mus_musculus 0 793
ENSMUST00000041342 Cacna1b-002 protein_coding Mus_musculus 0 569
ENSMUST00000102939 Cacna1b-004 protein_coding Mus_musculus 0 569
ENSMUST00000070864 Cacna1b-001 protein_coding Mus_musculus 0 569
ENSMUST00000100348 Cacna1b-201 protein_coding Mus_musculus 0 560
ENSMUST00000114447 Cacna1b-003 protein_coding Mus_musculus 0 560
ENSMUST00000135382 Cacna1a-003 retained_intron Mus_musculus 0 359
ENSMUST00000121390 Cacna1a-001 protein_coding Mus_musculus 0 359
ENSDART00000089956 cacna1da-201 protein_coding Danio_rerio 0.000000003 71
ENSDART00000100118 cacna1da-202 protein_coding Danio_rerio 0.000000003 71
ENSDART00000058276 cacna1da-001 protein_coding Danio_rerio 0.000000003 71

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