C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: calcium channel, voltage-dependent, N type, alpha 1B subunit
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000102939 Cacna1b-004 ENSMUSG00000004113 10090 - 2:24603894-24763129 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000102939
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000102939 0.044±0.00 0.197±0.00 0.101±0.03 8.781±4.45 0.119±0.02 0.840±0.35 0.060±0.01 0.123±0.00 0.173±0.03 0.026±0.00 0.029±0.02 0.128±0.06 0.271±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000QH CIL_0000QH_0002 CGP 2:24603887-24919609

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005245 IMP voltage-gated calcium channel activity
GO:0005509 IEA calcium ion binding
GO:0005515 IPI protein binding
GO:0005891 IDA voltage-gated calcium channel complex
GO:0006816 IMP calcium ion transport
GO:0007269 IMP neurotransmitter secretion
GO:0007626 IMP locomotory behavior
GO:0008016 IMP regulation of heart contraction
GO:0008217 IMP regulation of blood pressure
GO:0008331 IBA high voltage-gated calcium channel activity
GO:0016020 IDA membrane
GO:0030425 IDA dendrite
GO:0034765 IEA regulation of ion transmembrane transport
GO:0043025 IDA neuronal cell body
GO:0048265 IMP response to pain
GO:0051924 IMP regulation of calcium ion transport
GO:0070509 IBA calcium ion import
GO:0070588 IMP calcium ion transmembrane transport
GO:0086010 IBA membrane depolarization during action potential

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000013228 cacna1aa-201 protein_coding Danio_rerio 0 1127
ENSDART00000144774 cacna1aa-001 protein_coding Danio_rerio 0 1086
ENSDART00000138765 cacna1aa-002 protein_coding Danio_rerio 0 1079
ENSDART00000141154 cacna1ba-002 protein_coding Danio_rerio 0 688
ENSDART00000047719 cacna1ba-001 protein_coding Danio_rerio 0 688
ENST00000277549 CACNA1B-201 protein_coding Homo_sapiens 0 3945
ENST00000277551 CACNA1B-002 protein_coding Homo_sapiens 0 3956
ENST00000323022 CACNA1F-001 protein_coding Homo_sapiens 8e-36 158
ENST00000357570 CACNA1E-201 protein_coding Homo_sapiens 0 569
ENST00000358338 CACNA1E-202 protein_coding Homo_sapiens 0 569
ENST00000360108 CACNA1E-006 protein_coding Homo_sapiens 0 569
ENST00000360228 CACNA1A-001 protein_coding Homo_sapiens 0 1029
ENST00000367567 CACNA1E-203 protein_coding Homo_sapiens 0 569
ENST00000367570 CACNA1E-001 protein_coding Homo_sapiens 0 569
ENST00000367573 CACNA1E-003 protein_coding Homo_sapiens 0 569
ENST00000371355 CACNA1B-202 protein_coding Homo_sapiens 0 4588
ENST00000371357 CACNA1B-005 protein_coding Homo_sapiens 0 4549
ENST00000371363 CACNA1B-003 protein_coding Homo_sapiens 0 4549
ENST00000371372 CACNA1B-001 protein_coding Homo_sapiens 0 4588
ENST00000376251 CACNA1F-002 protein_coding Homo_sapiens 8e-36 158
ENST00000376265 CACNA1F-007 protein_coding Homo_sapiens 8e-36 158
ENST00000413253 CACNA1B-004 protein_coding Homo_sapiens 0 455
ENST00000480889 CACNA1F-006 processed_transcript Homo_sapiens 6e-37 158
ENST00000524607 CACNA1E-004 protein_coding Homo_sapiens 0 235
ENST00000533229 CACNA1E-005 retained_intron Homo_sapiens 5e-34 150
ENST00000573710 CACNA1A-002 protein_coding Homo_sapiens 0 1027
ENST00000593160 CACNA1A-014 retained_intron Homo_sapiens 0 268
ENST00000614285 CACNA1A-201 protein_coding Homo_sapiens 0 1002
ENST00000621551 CACNA1E-204 protein_coding Homo_sapiens 0 569
ENST00000621791 CACNA1E-002 protein_coding Homo_sapiens 0 569

Loading