C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: DEAD (Asp-Glu-Ala-Asp) box helicase 42
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000359353 DDX42-010 ENSG00000198231 9606 + 17:63774190-63818398 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; ColonOvaryPlacentaTestisENST00000359353
Transcript ID Colon Ovary Placenta Testis
ENST00000359353 6.455±0.00 23.072±0.00 28.435±0.00 39.098±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0009B9 CIL_0009B9_0001 VISTA 17:63374232-63977730
CIL_0006Q3 CIL_0006Q3_0001 CGP 17:63745250-63819317
CIL_0006Q4 CIL_0006Q4_0001 CGP 17:63773603-63830012

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003676 IEA nucleic acid binding
GO:0005515 IPI protein binding
GO:0005524 IEA ATP binding
GO:0005634 IDA nucleus
GO:0005737 IDA cytoplasm
GO:0006200 IEA ATP catabolic process
GO:0008026 IEA ATP-dependent helicase activity
GO:0008104 IDA protein localization
GO:0016020 IDA membrane
GO:0044822 IDA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000021046 Ddx42-001 protein_coding Mus_musculus 0 3282
ENSDART00000127297 ddx42-001 protein_coding Danio_rerio 0 904
ENSMUST00000118480 Gm14745-001 processed_pseudogene Mus_musculus 0 861
ENSDART00000076209 ddx42-201 protein_coding Danio_rerio 0 850
ENSMUST00000152860 Ddx42-002 processed_transcript Mus_musculus 0 350
ENSDART00000151504 ddx42-002 retained_intron Danio_rerio 0.00000002 66

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