C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: NDRG family member 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000359675 NDRG3-005 ENSG00000101079 9606 - 20:36651766-36746067 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBrainColonHeartLiverMuscleOvaryENST00000359675
Transcript ID Adrenal Brain Colon Heart Liver Muscle Ovary
ENST00000359675 5.055±0.00 11.119±3.56 6.383±0.00 2.926±0.00 0.939±0.00 2.439±0.00 2.822±0.27

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000304 CIL_000304_0002 CGP 20:36612318-36746078
CIL_0000XP CIL_0000XP_0001 CGP 20:36651766-36773818

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005737 IDA cytoplasm
GO:0007283 NAS spermatogenesis
GO:0030154 NAS cell differentiation
GO:0030308 NAS negative regulation of cell growth
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000072298 Ndrg3-001 protein_coding Mus_musculus 0 1685
ENSMUST00000069600 Ndrg3-002 protein_coding Mus_musculus 0 1033
ENSMUST00000109558 Ndrg3-004 protein_coding Mus_musculus 0 760
ENSMUST00000140297 Ndrg3-008 processed_transcript Mus_musculus 0 656
ENSMUST00000156491 Ndrg3-010 processed_transcript Mus_musculus 0 568
ENSMUST00000117381 Gm14278-001 unprocessed_pseudogene Mus_musculus 0 520
ENSMUST00000131955 Ndrg3-005 processed_transcript Mus_musculus 0 344
ENSMUST00000156651 Ndrg3-007 processed_transcript Mus_musculus 0 250
ENSMUST00000149599 Ndrg3-009 processed_transcript Mus_musculus 0 209

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