C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: predicted gene 13991
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000120190 Gm13991-001 ENSMUSG00000081787 10090 - 2:116527843-116528490 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000120190
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000120190 2.506±0.89 0.252±0.14 0.264±0.13 0.466±0.25 0.649±0.23 0.134±0.00 0.556±0.43 0.580±0.36 0.379±0.22 0.840±0.31 0.129±0.05 2.639±1.76 0.086±0.05 0.235±0.12

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007MM CIL_0007MM_0002 UCNEbase 2:114412124-116821493
CIL_0006QR CIL_0006QR_0002 CGP 2:115863064-116892494
CIL_00092N CIL_00092N_0002 VISTA 2:116023402-116625066
CIL_000806 CIL_000806_0002 VISTA 2:116507729-117109252

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000346213 RAB5C-001 protein_coding Homo_sapiens 0 381
ENST00000360299 RAB5B-001 protein_coding Homo_sapiens 0 942
ENST00000393860 RAB5C-201 protein_coding Homo_sapiens 0 381
ENST00000448789 RAB5B-003 protein_coding Homo_sapiens 0 470
ENST00000546810 RAB5B-008 retained_intron Homo_sapiens 0 468
ENST00000546881 RAB5C-007 retained_intron Homo_sapiens 0 230
ENST00000547517 RAB5C-002 protein_coding Homo_sapiens 0 381
ENST00000548068 RAB5B-005 protein_coding Homo_sapiens 0 503
ENST00000549505 RAB5B-002 nonsense_mediated_decay Homo_sapiens 0 481
ENST00000549915 RAB5B-006 protein_coding Homo_sapiens 0 200
ENST00000550283 RAB5B-010 retained_intron Homo_sapiens 0 252
ENST00000550406 RAB5C-008 protein_coding Homo_sapiens 5e-33 145
ENST00000550504 RAB5C-004 protein_coding Homo_sapiens 0 191
ENST00000551459 RAB5B-007 protein_coding Homo_sapiens 0 448
ENST00000552162 RAB5C-005 protein_coding Homo_sapiens 0 265
ENST00000553116 RAB5B-004 protein_coding Homo_sapiens 0 942
ENST00000592248 CTD-2132N18.3-002 nonsense_mediated_decay Homo_sapiens 0 292
ENST00000592574 CTD-2132N18.3-001 protein_coding Homo_sapiens 0 292

Loading