C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: RAB5B, member RAS oncogene family
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000000727 Rab5b-201 ENSMUSG00000000711 10090 - 10:128677193-128696268 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000000727
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000000727 49.671±4.16 54.510±10.33 36.063±10.87 32.462±13.33 47.324±5.92 41.707±5.24 31.298±1.43 50.935±1.87 35.551±15.35 63.711±3.15 40.438±4.34 43.207±10.57 30.009±12.57 13.061±5.30

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003924 TAS GTPase activity
GO:0005515 IPI protein binding
GO:0005525 IEA GTP binding
GO:0005768 IEA endosome
GO:0005886 IEA plasma membrane
GO:0006184 TAS GTP catabolic process
GO:0007032 IDA endosome organization
GO:0007264 IEA small GTPase mediated signal transduction
GO:0015031 IEA protein transport
GO:0019003 ISS GDP binding
GO:0019882 IEA antigen processing and presentation
GO:0030100 IDA regulation of endocytosis
GO:0030139 IDA endocytic vesicle
GO:0030742 IEA GTP-dependent protein binding
GO:0048227 IEA plasma membrane to endosome transport
GO:0070062 IEA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000346213 RAB5C-001 protein_coding Homo_sapiens 0 383
ENST00000360299 RAB5B-001 protein_coding Homo_sapiens 0 1657
ENST00000393860 RAB5C-201 protein_coding Homo_sapiens 0 383
ENST00000448789 RAB5B-003 protein_coding Homo_sapiens 0 811
ENST00000546810 RAB5B-008 retained_intron Homo_sapiens 0 597
ENST00000546881 RAB5C-007 retained_intron Homo_sapiens 0 224
ENST00000547517 RAB5C-002 protein_coding Homo_sapiens 0 383
ENST00000548068 RAB5B-005 protein_coding Homo_sapiens 0 538
ENST00000549505 RAB5B-002 nonsense_mediated_decay Homo_sapiens 0 1050
ENST00000549915 RAB5B-006 protein_coding Homo_sapiens 0 241
ENST00000550283 RAB5B-010 retained_intron Homo_sapiens 0 257
ENST00000550406 RAB5C-008 protein_coding Homo_sapiens 2e-31 139
ENST00000550504 RAB5C-004 protein_coding Homo_sapiens 2.8026e-45 185
ENST00000551459 RAB5B-007 protein_coding Homo_sapiens 0 479
ENST00000552162 RAB5C-005 protein_coding Homo_sapiens 0 259
ENST00000553116 RAB5B-004 protein_coding Homo_sapiens 0 1546
ENST00000592248 CTD-2132N18.3-002 nonsense_mediated_decay Homo_sapiens 0 281
ENST00000592574 CTD-2132N18.3-001 protein_coding Homo_sapiens 0 281

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