C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ryanodine receptor 1 (skeletal)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000360985 RYR1-201 ENSG00000196218 9606 + 19:38433723-38587562 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBladderBrainBreastColonHeartKidneyLiverMusclePlacentaTestisENST00000360985
Transcript ID Adrenal Bladder Brain Breast Colon Heart Kidney Liver Muscle Placenta Testis
ENST00000360985 0.474±0.00 0.066±0.00 4.588±0.00 6.504±0.00 0.125±0.00 0.017±0.00 0.194±0.17 0.162±0.00 40.052±18.65 0.073±0.00 1.375±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005216 IEA ion channel activity
GO:0005219 IEA ryanodine-sensitive calcium-release channel activity
GO:0005262 IEA calcium channel activity
GO:0005515 IEA protein binding
GO:0006811 IEA ion transport
GO:0006874 IEA cellular calcium ion homeostasis
GO:0016020 IEA membrane
GO:0016021 IEA integral component of membrane
GO:0055085 IEA transmembrane transport
GO:0070588 IEA calcium ion transmembrane transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000032813 Ryr1-201 protein_coding Mus_musculus 0 18080
ENSMUST00000179893 Ryr1-202 protein_coding Mus_musculus 0 18060
ENSDART00000036015 ryr1b-201 protein_coding Danio_rerio 0 3367
ENSDART00000014749 ryr1a-201 protein_coding Danio_rerio 0 922
ENSDART00000137089 ryr1a-001 protein_coding Danio_rerio 0 922
ENSDART00000147464 ryr3-001 protein_coding Danio_rerio 0 708
ENSDART00000077838 ryr3-201 protein_coding Danio_rerio 0 433
ENSDART00000078464 CABZ01065506.1-201 protein_coding Danio_rerio 0 409
ENSDART00000149737 ryr2b-001 protein_coding Danio_rerio 0 405
ENSDART00000122570 protein_coding Danio_rerio 0 342

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