C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ryanodine receptor 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSDART00000147464 ryr3-001 ENSDARG00000071331 7955 - 20:29294352-29446621 protein_coding

Danio rerio EnsemblZv9

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Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainHeartLiverMuscleENSDART00000147464
Transcript ID Brain Heart Liver Muscle
ENSDART00000147464 0.807±0.03 2.340±0.00 0.022±0.00 38.958±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003HM CIL_0003HM_0001 CGP 20:29254245-29295270
CIL_000222 CIL_000222_0001 CGP 20:29257464-29446621

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005216 IEA ion channel activity
GO:0005219 IEA ryanodine-sensitive calcium-release channel activity
GO:0005262 IEA calcium channel activity
GO:0005488 IEA binding
GO:0005509 IEA calcium ion binding
GO:0005515 IEA protein binding
GO:0006810 IEA transport
GO:0006811 IEA ion transport
GO:0006874 IEA cellular calcium ion homeostasis
GO:0016020 IEA membrane
GO:0016021 IEA integral to membrane
GO:0055085 IEA transmembrane transport
GO:0070588 IEA calcium ion transmembrane transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000021750 Ryr2-201 protein_coding Mus_musculus 0 815
ENSMUST00000032813 Ryr1-201 protein_coding Mus_musculus 0 664
ENSMUST00000170156 Ryr2-202 protein_coding Mus_musculus 0 815
ENSMUST00000179893 Ryr1-202 protein_coding Mus_musculus 0 664
ENST00000355481 RYR1-001 protein_coding Homo_sapiens 0 708
ENST00000359596 RYR1-010 protein_coding Homo_sapiens 0 708
ENST00000360985 RYR1-201 protein_coding Homo_sapiens 0 708
ENST00000389232 RYR3-001 protein_coding Homo_sapiens 0 898
ENST00000415757 RYR3-002 protein_coding Homo_sapiens 0 898
ENST00000593322 RYR1-008 nonsense_mediated_decay Homo_sapiens 0 315
ENST00000594335 RYR1-002 nonsense_mediated_decay Homo_sapiens 0 575
ENST00000622037 RYR3-201 protein_coding Homo_sapiens 0 898

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