C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: solute carrier family 9, subfamily A (NHE8, cation proton antiporter 8), member 8
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000361573 SLC9A8-001 ENSG00000197818 9606 + 20:49812881-49892242 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000361573
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000361573 2.185±0.00 2.757±0.00 0.462±0.00 0.768±0.09 1.600±0.91 0.822±0.00 1.090±0.59 2.186±0.08 2.232±0.01 1.407±0.00 0.539±0.00 1.434±0.85 2.622±0.52 4.412±0.12

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008I4 CIL_0008I4_0001 VISTA 20:49375075-49977641
CIL_000277 CIL_000277_0001 CGP 20:49632945-49892242
CIL_00087E CIL_00087E_0001 VISTA 20:49719805-50323644
CIL_0001VJ CIL_0001VJ_0001 CGP 20:49812713-49915508

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000139 TAS Golgi membrane
GO:0006811 TAS ion transport
GO:0006812 IEA cation transport
GO:0006814 IEA sodium ion transport
GO:0006885 IEA regulation of pH
GO:0015299 IEA solute:proton antiporter activity
GO:0015385 IEA sodium:proton antiporter activity
GO:0016021 IEA integral component of membrane
GO:0035725 IEA sodium ion transmembrane transport
GO:0055085 TAS:IEA transmembrane transport
GO:1902600 IEA hydrogen ion transmembrane transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000047815 Slc9a8-001 protein_coding Mus_musculus 0 2145
ENSMUST00000131956 Slc9a8-005 processed_transcript Mus_musculus 0 1903
ENSMUST00000073873 Slc9a8-201 protein_coding Mus_musculus 0 1860
ENSMUST00000109218 Slc9a8-004 protein_coding Mus_musculus 0 1794
ENSMUST00000148454 Slc9a8-007 processed_transcript Mus_musculus 0 968
ENSMUST00000155585 Slc9a8-012 processed_transcript Mus_musculus 0 935
ENSMUST00000139673 Slc9a8-006 processed_transcript Mus_musculus 0 808
ENSMUST00000125855 Slc9a8-011 processed_transcript Mus_musculus 0 732
ENSMUST00000135353 Slc9a8-008 retained_intron Mus_musculus 0 590
ENSMUST00000141400 Slc9a8-009 processed_transcript Mus_musculus 0 577
ENSMUST00000124139 Slc9a8-003 retained_intron Mus_musculus 0 276
ENSMUST00000150326 Slc9a8-002 retained_intron Mus_musculus 0 241
ENSMUST00000149607 Slc9a8-010 processed_transcript Mus_musculus 0 217

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