C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0001VJ_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000197818-ENSG00000158480 CGP 9606 20:49812713-49915508
GeneTranscriptPositionBiotype
ENSG00000158480 (SPATA2)
spermatogenesis associated 2 		ENST00000289431 (SPATA2-001) 49903391-49915508 protein_coding
ENST00000422556 (SPATA2-201) 49903394-49913739 protein_coding
ENSG00000197818 (SLC9A8)
solute carrier family 9, subfamily A (NHE8, cation proton antiporter 8), member 8 		ENST00000361573 (SLC9A8-001) 49812881-49892242 protein_coding
ENST00000417961 (SLC9A8-201) 49812713-49892241 protein_coding
ENST00000489787 (SLC9A8-002) 49812894-49815444 processed_transcript
ENST00000490250 (SLC9A8-003) 49886371-49892242 processed_transcript
ENSG00000237788 (RP5-1041C10.3)
 ENST00000429893 (RP5-1041C10.3-001) 49829125-49831085 processed_pseudogene
CIL_0001VJ_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000039463-ENSMUSG00000047030 CGP 10090 2:167421712-167492887
GeneTranscriptPositionBiotype
ENSMUSG00000006418 (Rnf114)
ring finger protein 114 		ENSMUST00000078050 (Rnf114-001) 167503089-167516173 protein_coding
ENSMUST00000109214 (Rnf114-002) 167492645-167516166 protein_coding
ENSMUST00000127939 (Rnf114-003) 167503446-167516164 nonsense_mediated_decay
ENSMUSG00000039463 (Slc9a8)
solute carrier family 9 (sodium/hydrogen exchanger), member 8 		ENSMUST00000047815 (Slc9a8-001) 167421712-167477000 protein_coding
ENSMUST00000073873 (Slc9a8-201) 167421721-167476998 protein_coding
ENSMUST00000109218 (Slc9a8-004) 167421721-167474636 protein_coding
ENSMUST00000124139 (Slc9a8-003) 167421737-167436049 retained_intron
ENSMUST00000125855 (Slc9a8-011) 167450966-167467724 processed_transcript
ENSMUST00000131956 (Slc9a8-005) 167421732-167476999 processed_transcript
ENSMUST00000135353 (Slc9a8-008) 167421730-167446950 retained_intron
ENSMUST00000139673 (Slc9a8-006) 167421742-167476999 processed_transcript
ENSMUST00000141400 (Slc9a8-009) 167421738-167467699 processed_transcript
ENSMUST00000148454 (Slc9a8-007) 167451155-167476999 processed_transcript
ENSMUST00000149607 (Slc9a8-010) 167424119-167467726 processed_transcript
ENSMUST00000150326 (Slc9a8-002) 167421723-167426134 retained_intron
ENSMUST00000155585 (Slc9a8-012) 167451055-167469076 processed_transcript
ENSMUSG00000047030 (Spata2)
spermatogenesis associated 2 		ENSMUST00000057627 (Spata2-001) 167481133-167492887 protein_coding
ENSMUST00000109211 (Spata2-002) 167481433-167492845 protein_coding
ENSMUST00000126389 (Spata2-003) 167485355-167492872 processed_transcript
ENSMUST00000147051 (Spata2-006) 167484520-167485830 retained_intron
ENSMUST00000154770 (Spata2-004) 167485513-167492878 processed_transcript
ENSMUST00000155875 (Spata2-005) 167485406-167492845 processed_transcript

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0001VJ_0001ENSG00000158480ENST00000289431ENST00000422556ENSG00000197818ENST00000361573ENST00000417961ENST00000489787ENST00000490250ENSG00000237788ENST00000429893CIL_0001VJ_0002ENSMUSG00000006418ENSMUST00000078050ENSMUST00000109214ENSMUST00000127939ENSMUSG00000039463ENSMUST00000047815ENSMUST00000073873ENSMUST00000109218ENSMUST00000124139ENSMUST00000125855ENSMUST00000131956ENSMUST00000135353ENSMUST00000139673ENSMUST00000141400ENSMUST00000148454ENSMUST00000149607ENSMUST00000150326ENSMUST00000155585ENSMUSG00000047030ENSMUST00000057627ENSMUST00000109211ENSMUST00000126389ENSMUST00000147051ENSMUST00000154770ENSMUST00000155875
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0001VJ_0001ENSG00000158480ENST00000289431ENST00000422556ENSG00000197818ENST00000361573ENST00000417961ENST00000490250ENSG00000237788ENST00000429893CIL_0001VJ_0002ENSMUSG00000006418ENSMUST00000078050ENSMUST00000127939ENSMUSG00000039463ENSMUST00000047815ENSMUST00000073873ENSMUST00000109218ENSMUST00000135353ENSMUST00000141400ENSMUST00000148454ENSMUST00000155585ENSMUSG00000047030ENSMUST00000057627ENSMUST00000109211
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000158480 ENST00000289431 1.896±0.00 2.574±0.00 0.495±0.00 5.028±1.86 1.132±0.84 1.654±0.43 1.240±0.78 1.503±1.38 0.897±0.46 1.306±0.76 2.281±2.03 5.009±1.48 3.069±0.56 10.737±1.00
ENST00000422556 N/A N/A N/A 0.777±0.00 0.324±0.00 N/A 0.386±0.00 N/A N/A N/A N/A N/A N/A N/A
ENSG00000197818 ENST00000361573 2.185±0.00 2.757±0.00 0.462±0.00 0.768±0.09 1.600±0.91 0.822±0.00 1.090±0.59 2.186±0.08 2.232±0.01 1.407±0.00 0.539±0.00 1.434±0.85 2.622±0.52 4.412±0.12
ENST00000417961 N/A N/A N/A 0.499±0.00 N/A N/A N/A N/A N/A 0.771±0.00 2.627±0.00 0.566±0.00 0.388±0.00 0.584±0.00
ENST00000489787 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000490250 N/A 1.989±0.00 N/A N/A 0.972±0.00 0.176±0.00 0.103±0.00 1.425±0.00 1.730±0.00 0.492±0.29 1.732±0.13 0.795±0.21 N/A 0.823±0.00
ENSG00000237788 ENST00000429893 0.067±0.00 0.184±0.00 0.057±0.00 0.075±0.01 0.204±0.16 0.197±0.16 0.129±0.03 0.136±0.00 0.033±0.00 0.088±0.06 0.056±0.03 0.117±0.09 0.015±0.00 0.009±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000006418 ENSMUST00000078050 13.335±1.99 11.709±1.83 12.670±2.13 29.600±4.42 18.045±3.64 20.672±2.86 14.435±0.61 17.705±2.89 16.576±3.07 20.040±1.11 5.243±0.96 17.120±6.97 10.583±6.26 9.162±3.51
ENSMUST00000109214 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000127939 23.809±3.83 34.251±2.95 20.513±2.84 18.747±5.03 36.696±7.89 26.884±3.54 21.081±8.37 27.449±2.68 17.659±6.67 38.464±3.64 8.144±1.76 26.975±6.08 13.293±5.68 11.175±2.80
ENSMUSG00000039463 ENSMUST00000047815 5.893±0.50 8.868±1.50 8.395±1.16 5.197±1.33 6.114±1.98 9.881±3.09 6.270±1.22 16.384±4.81 6.771±1.15 5.679±0.60 7.630±0.64 4.526±1.35 6.549±3.09 7.632±3.85
ENSMUST00000073873 N/A N/A N/A N/A 3.300±0.00 N/A N/A N/A N/A N/A 1.791±0.00 N/A N/A N/A
ENSMUST00000109218 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 6.245±1.09
ENSMUST00000124139 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000125855 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000131956 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000135353 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 3.915±0.00 N/A N/A
ENSMUST00000139673 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000141400 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.428±0.00
ENSMUST00000148454 2.834±0.07 4.220±0.00 4.792±0.54 2.418±1.06 5.241±1.36 5.175±1.55 2.117±0.03 56.690±27.91 3.504±1.08 4.277±0.51 1.882±0.00 4.754±1.74 1.358±0.00 1.803±1.38
ENSMUST00000149607 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000150326 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000155585 N/A N/A N/A N/A 19.489±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000047030 ENSMUST00000057627 9.537±0.43 13.172±3.16 6.495±0.85 11.039±4.18 11.999±2.23 24.739±1.09 4.967±0.99 11.275±1.60 4.667±1.42 10.435±1.18 4.878±0.95 12.725±4.56 6.292±2.96 6.529±0.25
ENSMUST00000109211 N/A N/A N/A 9.200±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000126389 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000147051 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000154770 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000155875 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A

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