C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: spectrin repeat containing, nuclear envelope 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000367251 SYNE1-006 ENSG00000131018 9606 - 6:152121769-152225837 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBreastKidneyLiverLungMuscleOvaryPlacentaTestisENST00000367251
Transcript ID Adipose Breast Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000367251 3.513±0.00 3.172±0.00 5.526±0.00 0.575±0.00 5.995±0.00 1.360±0.00 4.252±0.00 1.297±0.21 4.811±1.57

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005EH CIL_0005EH_0001 CGP 6:151494030-152129619
CIL_0005EI CIL_0005EI_0001 CGP 6:151656691-152637801
CIL_0002QH CIL_0002QH_0002 CGP 6:152121684-152724567

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding
GO:0005634 IDA nucleus
GO:0005737 IDA cytoplasm
GO:0031965 IDA nuclear membrane

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000095899 Syne1-202 protein_coding Mus_musculus 0 1447

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