C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0005EH_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000120262-ENSG00000091831 CGP 9606 6:151494030-152129619
GeneTranscriptPositionBiotype
ENSG00000091831 (ESR1)
estrogen receptor 1 		ENST00000206249 (ESR1-001) 151807551-152103274 protein_coding
ENST00000338799 (ESR1-002) 151804431-152099053 protein_coding
ENST00000404742 (ESR1-004) 151690496-151808166 protein_coding
ENST00000406599 (ESR1-009) 151807679-152098978 protein_coding
ENST00000415488 (ESR1-010) 151880657-152061059 protein_coding
ENST00000427531 (ESR1-008) 151809107-152129619 protein_coding
ENST00000440973 (ESR1-201) 151690496-152103274 protein_coding
ENST00000443427 (ESR1-202) 151807319-152103274 protein_coding
ENST00000446550 (ESR1-007) 151807196-151808259 protein_coding
ENST00000456483 (ESR1-203) 151807679-152098978 protein_coding
ENST00000473497 (ESR1-005) 151656691-151807857 processed_transcript
ENST00000482101 (ESR1-003) 151944172-151984165 processed_transcript
ENST00000488573 (ESR1-006) 151808105-151811278 processed_transcript
ENSG00000120262 (CCDC170)
coiled-coil domain containing 170 		ENST00000239374 (CCDC170-001) 151494030-151621193 protein_coding
ENST00000537358 (CCDC170-003) 151593028-151615520 retained_intron
ENST00000544131 (CCDC170-002) 151536271-151544694 processed_transcript

Homo sapiens Ensembl (GRCh38)

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CIL_0005EH_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000019767-ENSMUSG00000019768 CGP 10090 10:4482502-5005614
GeneTranscriptPositionBiotype
ENSMUSG00000019767 (Ccdc170)
coiled-coil domain containing 170 		ENSMUST00000019901 (Ccdc170-201) 4509872-4561111 protein_coding
ENSMUST00000138112 (Ccdc170-001) 4482502-4562231 protein_coding
ENSMUST00000145465 (Ccdc170-002) 4511543-4514312 protein_coding
ENSMUST00000157064 (Ccdc170-003) 4532995-4541701 processed_transcript
ENSMUSG00000019768 (Esr1)
estrogen receptor 1 (alpha) 		ENSMUST00000067086 (Esr1-002) 4612021-5003761 protein_coding
ENSMUST00000105588 (Esr1-007) 4710155-4967336 protein_coding
ENSMUST00000105589 (Esr1-004) 4710155-5002024 protein_coding
ENSMUST00000105590 (Esr1-001) 4611989-5005614 protein_coding
ENSMUST00000127145 (Esr1-010) 4712651-4784824 processed_transcript
ENSMUST00000127934 (Esr1-009) 4922970-4997930 processed_transcript
ENSMUST00000133985 (Esr1-008) 4611996-4671884 retained_intron
ENSMUST00000137012 (Esr1-006) 4936526-5001656 processed_transcript
ENSMUST00000138828 (Esr1-003) 4612013-4857509 retained_intron
ENSMUST00000149195 (Esr1-005) 4611593-4893083 processed_transcript
ENSMUSG00000065371 (Gm22739)
predicted gene, 22739 		ENSMUST00000083437 (Gm22739-201) 4484234-4484393 snRNA

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0005EH_0001ENSG00000091831ENST00000206249ENST00000338799ENST00000404742ENST00000406599ENST00000415488ENST00000427531ENST00000440973ENST00000443427ENST00000446550ENST00000456483ENST00000473497ENST00000482101ENST00000488573ENSG00000120262ENST00000239374ENST00000537358ENST00000544131CIL_0005EH_0002ENSMUSG00000019767ENSMUST00000019901ENSMUST00000138112ENSMUST00000145465ENSMUST00000157064ENSMUSG00000019768ENSMUST00000067086ENSMUST00000105588ENSMUST00000105589ENSMUST00000105590ENSMUST00000127145ENSMUST00000127934ENSMUST00000133985ENSMUST00000137012ENSMUST00000138828ENSMUST00000149195ENSMUSG00000065371ENSMUST00000083437
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0005EH_0001ENSG00000091831ENST00000206249ENST00000338799ENST00000404742ENST00000406599ENST00000415488ENST00000427531ENST00000440973ENST00000443427ENSG00000120262ENST00000239374ENST00000537358ENST00000544131CIL_0005EH_0002ENSMUSG00000019767ENSMUST00000019901ENSMUST00000138112ENSMUST00000145465ENSMUST00000157064ENSMUSG00000019768ENSMUST00000067086ENSMUST00000105589ENSMUST00000105590ENSMUST00000127934ENSMUST00000137012ENSMUST00000138828ENSMUST00000149195ENSMUSG00000065371ENSMUST00000083437
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000091831 ENST00000206249 0.563±0.00 0.217±0.00 N/A N/A N/A N/A N/A N/A N/A 0.338±0.00 N/A 4.120±3.84 N/A N/A
ENST00000338799 N/A N/A N/A N/A 0.536±0.00 N/A N/A N/A N/A 0.418±0.00 N/A N/A N/A N/A
ENST00000404742 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.300±0.00 N/A
ENST00000406599 N/A N/A N/A N/A N/A N/A 0.520±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000415488 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.610±0.00 N/A
ENST00000427531 0.125±0.00 0.273±0.00 N/A 0.187±0.06 0.328±0.00 0.410±0.00 0.142±0.00 N/A 0.414±0.00 N/A 0.029±0.00 0.024±0.00 N/A N/A
ENST00000440973 N/A N/A N/A N/A 0.483±0.00 N/A 0.088±0.00 2.888±0.00 1.991±0.00 0.178±0.00 N/A 1.506±1.07 N/A N/A
ENST00000443427 0.276±0.00 N/A N/A N/A 0.935±0.00 0.266±0.00 0.188±0.00 0.775±0.00 0.449±0.00 N/A 0.807±0.00 0.641±0.40 0.249±0.03 N/A
ENST00000446550 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000456483 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000473497 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000482101 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000488573 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000120262 ENST00000239374 0.751±0.00 0.116±0.00 0.107±0.00 0.162±0.00 1.178±0.76 N/A 0.069±0.00 N/A N/A 3.978±0.00 N/A 1.439±1.70 1.635±0.00 2.651±1.30
ENST00000537358 N/A N/A N/A N/A N/A 0.216±0.00 N/A 0.568±0.00 N/A 4.445±0.00 N/A 0.192±0.00 4.426±0.00 17.153±0.00
ENST00000544131 N/A N/A N/A N/A N/A N/A 0.285±0.00 N/A N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000019767 ENSMUST00000019901 N/A N/A N/A N/A 0.157±0.00 0.170±0.04 N/A N/A 0.006±0.00 N/A 0.104±0.06 3.911±0.00 3.457±2.00 0.090±0.00
ENSMUST00000138112 0.386±0.22 0.138±0.05 0.054±0.00 0.155±0.00 0.276±0.18 0.125±0.05 0.059±0.02 N/A 0.009±0.00 0.900±0.05 0.059±0.02 0.712±0.35 1.449±0.00 0.224±0.04
ENSMUST00000145465 N/A N/A N/A N/A N/A N/A 0.042±0.00 N/A N/A N/A N/A N/A N/A 0.620±0.00
ENSMUST00000157064 N/A 0.098±0.00 N/A N/A N/A 0.265±0.19 N/A 1.590±0.00 N/A N/A 0.289±0.00 0.878±0.00 N/A N/A
ENSMUSG00000019768 ENSMUST00000067086 N/A N/A N/A 0.115±0.00 N/A 0.362±0.14 N/A N/A 0.012±0.00 N/A N/A N/A N/A 0.287±0.00
ENSMUST00000105588 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000105589 12.704±8.72 3.030±0.64 N/A 0.042±0.01 6.510±1.75 0.349±0.07 0.123±0.03 N/A 0.035±0.01 N/A N/A 21.855±7.99 0.157±0.01 0.449±0.04
ENSMUST00000105590 18.243±16.87 2.830±1.49 0.999±0.18 0.038±0.01 5.729±1.49 0.608±0.07 0.262±0.09 1.983±0.26 4.614±3.18 0.505±0.21 1.174±0.68 11.843±4.05 0.175±0.00 0.327±0.05
ENSMUST00000127145 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000127934 N/A N/A N/A 0.064±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000133985 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000137012 33.339±0.00 N/A N/A N/A N/A N/A 0.333±0.04 2.079±0.00 N/A N/A N/A N/A 0.495±0.00 0.633±0.06
ENSMUST00000138828 N/A 2.617±0.88 N/A N/A N/A 0.425±0.00 N/A N/A 0.028±0.00 N/A N/A N/A N/A N/A
ENSMUST00000149195 N/A N/A N/A N/A N/A N/A N/A N/A 0.024±0.01 0.229±0.00 N/A N/A N/A N/A
ENSMUSG00000065371 ENSMUST00000083437 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.233±0.00 N/A

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