C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: thymocyte selection associated
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000368248 THEMIS-201 ENSG00000172673 9606 - 6:127708194-127901081 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLungMuscleOvaryPlacentaTestisENST00000368248
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Lung Muscle Ovary Placenta Testis
ENST00000368248 0.020±0.00 1.142±0.00 1.418±0.00 0.884±0.00 0.441±0.00 0.065±0.00 0.171±0.00 0.778±0.00 0.002±0.00 0.060±0.03 0.073±0.00 0.028±0.01

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001EM CIL_0001EM_0002 CGP 6:127519455-127918631
CIL_0001EN CIL_0001EN_0002 CGP 6:127708072-128520674

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005634 ISS nucleus
GO:0005737 ISS cytoplasm
GO:0005911 IEA cell-cell junction
GO:0008180 ISS COP9 signalosome
GO:0043368 ISS positive T cell selection
GO:0043383 ISS negative T cell selection
GO:0050852 ISS T cell receptor signaling pathway

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000056097 Themis-001 protein_coding Mus_musculus 0 1857
ENSMUST00000105516 Themis-005 protein_coding Mus_musculus 0 1635
ENSMUST00000060409 Themis-004 protein_coding Mus_musculus 0 1635
ENSMUST00000159927 Themis-002 nonsense_mediated_decay Mus_musculus 0 1339

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