C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: non-SMC element 4 homolog A (S. cerevisiae)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000369023 NSMCE4A-005 ENSG00000107672 9606 - 10:121957088-121975217 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000369023
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000369023 10.153±0.00 23.007±0.00 0.944±0.00 2.392±0.96 13.132±11.30 7.435±5.21 3.685±2.86 8.119±1.89 4.580±2.97 4.346±1.54 5.290±4.07 15.690±7.72 9.145±1.65 5.464±2.19

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00095T CIL_00095T_0001 VISTA 10:121499915-122101503
CIL_0001BD CIL_0001BD_0001 CGP 10:121740421-121975217
CIL_00047F CIL_00047F_0002 CGP 10:121957088-122254545

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000781 IEA chromosome, telomeric region
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0006281 IEA DNA repair
GO:0006310 IEA DNA recombination
GO:0030915 IDA Smc5-Smc6 complex
GO:2001022 IMP positive regulation of response to DNA damage stimulus

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000160289 Nsmce4a-001 protein_coding Mus_musculus 0 1552
ENSMUST00000159694 Nsmce4a-006 protein_coding Mus_musculus 0 867
ENSMUST00000161076 Nsmce4a-003 nonsense_mediated_decay Mus_musculus 0 695
ENSMUST00000161470 Nsmce4a-004 retained_intron Mus_musculus 0 368
ENSMUST00000162510 Nsmce4a-005 retained_intron Mus_musculus 2.94273e-44 183

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