C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: polypyrimidine tract binding protein 2
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000117569 PTBP2 9606 + 1:96721665-96823738 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000370197 PTBP2-004 96721810-96814793 protein_coding
  ENST00000370198 PTBP2-003 96721810-96814793 protein_coding
  ENST00000426398 PTBP2-002 96721822-96814793 protein_coding
  ENST00000459735 PTBP2-010 96784948-96812928 processed_transcript
  ENST00000460706 PTBP2-009 96721792-96771475 processed_transcript
  ENST00000462433 PTBP2-011 96806811-96812928 processed_transcript
  ENST00000476419 PTBP2-008 96721822-96813488 processed_transcript
  ENST00000476783 PTBP2-006 96785194-96813447 processed_transcript
  ENST00000482253 PTBP2-005 96721665-96813711 processed_transcript
  ENST00000492905 PTBP2-007 96785194-96813447 processed_transcript
  ENST00000609116 PTBP2-001 96721783-96823738 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000370197ENST00000370198ENST00000426398ENST00000460706ENST00000462433ENST00000476419ENST00000609116
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000370197 1.368±0.00 N/A N/A 3.422±1.30 1.215±0.54 2.450±0.00 1.281±0.00 N/A N/A 2.166±0.00 1.306±0.00 2.091±0.32 0.299±0.00 4.323±0.59
ENST00000370198 N/A N/A N/A 2.642±0.00 1.277±0.00 N/A 0.728±0.00 1.041±0.00 N/A N/A 1.307±0.00 1.641±0.00 0.346±0.00 N/A
ENST00000426398 1.375±0.00 4.172±0.00 2.119±0.00 6.759±0.73 1.528±0.00 5.041±2.49 1.009±0.00 2.315±1.91 6.940±6.35 0.796±0.00 N/A 2.263±0.91 0.822±0.04 10.218±1.28
ENST00000460706 N/A N/A 2.060±0.00 N/A 4.191±0.00 N/A 1.014±0.00 N/A N/A 2.571±0.00 N/A N/A N/A N/A
ENST00000462433 N/A N/A N/A N/A N/A N/A N/A 3.740±0.00 N/A N/A 8.121±0.00 3.978±0.00 1.312±0.00 24.972±0.00
ENST00000476419 N/A N/A N/A N/A N/A N/A 0.619±0.00 N/A N/A N/A 1.145±0.00 N/A N/A N/A
ENST00000609116 N/A N/A N/A 0.653±0.00 0.689±0.00 N/A N/A 0.083±0.00 1.329±0.00 0.285±0.15 0.321±0.15 N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007J2 CIL_0007J2_0001 UCNEbase 1:95311769-97837577
CIL_0007C5 CIL_0007C5_0002 CGP 1:96721665-97921049

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0003676 IEA nucleic acid binding
GO:0003723 IEA RNA binding
GO:0003729 IEA mRNA binding
GO:0005515 IEA protein binding
GO:0005634 IEA nucleus
GO:0005681 IEA spliceosomal complex
GO:0006376 IEA mRNA splice site selection
GO:0006397 IEA mRNA processing
GO:0033119 IDA negative regulation of RNA splicing
GO:0044822 IDA poly(A) RNA binding
GO:2000177 IEA regulation of neural precursor cell proliferation

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000015230 ptbp2a polypyrimidine tract binding protein 2a protein_coding Danio_rerio
ENSDARG00000015901 ptbp2b polypyrimidine tract binding protein 2b protein_coding Danio_rerio
ENSMUSG00000028134 Ptbp2 polypyrimidine tract binding protein 2 protein_coding Mus_musculus

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