C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ELAV like neuron-specific RNA binding protein 4
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000371827 ELAVL4-001 ENSG00000162374 9606 + 1:50103910-50203770 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBrainBreastColonLiverOvaryPlacentaTestisENST00000371827
Transcript ID Adrenal Brain Breast Colon Liver Ovary Placenta Testis
ENST00000371827 0.012±0.00 6.678±2.03 0.047±0.00 0.368±0.24 0.017±0.00 0.020±0.01 0.042±0.00 0.311±0.04

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000631 CIL_000631_0002 CGP 1:48727523-50203786
CIL_00063G CIL_00063G_0002 CGP 1:50048014-50423500

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0003676 IEA nucleic acid binding
GO:0003723 TAS:IEA RNA binding
GO:0003730 TAS mRNA 3'-UTR binding
GO:0006396 TAS RNA processing
GO:0006397 TAS mRNA processing
GO:0017091 IDA AU-rich element binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000106601 Elavl4-007 protein_coding Mus_musculus 0 5788
ENSMUST00000106600 Elavl4-006 protein_coding Mus_musculus 0 5642
ENSMUST00000102722 Elavl4-005 protein_coding Mus_musculus 0 5642
ENSMUST00000106598 Elavl4-003 protein_coding Mus_musculus 0 5642
ENSMUST00000106597 Elavl4-004 protein_coding Mus_musculus 0 4449
ENSMUST00000102723 Elavl4-002 protein_coding Mus_musculus 0 4449
ENSMUST00000106603 Elavl4-001 protein_coding Mus_musculus 0 4449
ENSMUST00000153200 Elavl4-009 processed_transcript Mus_musculus 0 1050
ENSDART00000134787 elavl4-002 protein_coding Danio_rerio 0 957
ENSDART00000110171 elavl4-001 protein_coding Danio_rerio 0 931
ENSMUST00000138972 Elavl4-012 protein_coding Mus_musculus 0 660
ENSMUST00000144554 Elavl4-010 processed_transcript Mus_musculus 0 592
ENSMUST00000153906 Elavl4-011 protein_coding Mus_musculus 0 472
ENSMUST00000142722 Elavl4-008 protein_coding Mus_musculus 0 381

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