C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description:
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000372214 RP11-571F15.3-001 ENSG00000233668 9606 - 9:34223984-34224628 processed_pseudogene

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLungMuscleOvaryTestisENST00000372214
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Lung Muscle Ovary Testis
ENST00000372214 0.147±0.00 0.418±0.00 0.055±0.00 0.026±0.00 0.295±0.00 0.073±0.00 0.125±0.06 0.441±0.00 0.234±0.00 0.094±0.04 0.082±0.01

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00004U CIL_00004U_0001 CGP 9:34086387-34252523
CIL_0005IT CIL_0005IT_0001 CGP 9:34179013-34329200

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000102696 Rps8-001 protein_coding Mus_musculus 0 556
ENSMUST00000180940 Gm11353-001 processed_pseudogene Mus_musculus 0 551
ENSMUST00000140687 Gm15501-001 transcribed_processed_pseudogene Mus_musculus 0 545
ENSMUST00000133910 Gm15501-002 processed_transcript Mus_musculus 0 545
ENSMUST00000118709 Rps8-ps2-001 processed_pseudogene Mus_musculus 0 523
ENSMUST00000121572 Gm14438-001 processed_pseudogene Mus_musculus 0 523
ENSMUST00000120833 Gm14414-001 processed_pseudogene Mus_musculus 0 479
ENSMUST00000092523 Gm10712-001 processed_pseudogene Mus_musculus 0 475
ENSMUST00000161442 Gm16585-001 processed_pseudogene Mus_musculus 0 453
ENSMUST00000189312 RP24-160J12.4-001 processed_pseudogene Mus_musculus 0 313
ENSMUST00000137423 Rps8-005 retained_intron Mus_musculus 0 259
ENSMUST00000191349 RP24-160E3.1-001 processed_pseudogene Mus_musculus 0 195

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