C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: argininosuccinate synthase 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000372393 ASS1-003 ENSG00000130707 9606 + 9:130444988-130501255 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBrainBreastColonHeartKidneyOvaryPlacentaTestisENST00000372393
Transcript ID Adrenal Brain Breast Colon Heart Kidney Ovary Placenta Testis
ENST00000372393 14.381±0.00 10.633±0.00 38.403±0.00 10.372±0.00 4.883±0.00 80.646±0.00 23.384±6.40 17.804±2.07 13.816±7.53

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000936 CIL_000936_0001 VISTA 9:130178260-130779710
CIL_0005UI CIL_0005UI_0001 CGP 9:130265882-130501274
CIL_0008XQ CIL_0008XQ_0001 VISTA 9:130365168-130965841
CIL_0005UH CIL_0005UH_0001 CGP 9:130444929-130638352

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000050 IEA urea cycle
GO:0000052 IMP citrulline metabolic process
GO:0000053 IMP argininosuccinate metabolic process
GO:0004055 IMP:IEA argininosuccinate synthase activity
GO:0005515 IPI protein binding
GO:0005524 IEA ATP binding
GO:0005737 TAS cytoplasm
GO:0005829 TAS cytosol
GO:0006526 IEA arginine biosynthetic process
GO:0006531 IMP aspartate metabolic process
GO:0016597 IMP amino acid binding
GO:0034641 TAS cellular nitrogen compound metabolic process
GO:0044281 TAS small molecule metabolic process
GO:0044822 IDA poly(A) RNA binding
GO:0045429 IMP positive regulation of nitric oxide biosynthetic process
GO:0070062 IDA extracellular vesicular exosome
GO:0071499 IMP cellular response to laminar fluid shear stress
GO:1903038 IMP negative regulation of leukocyte cell-cell adhesion

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000053865 Gm5424-201 protein_coding Mus_musculus 0 1663
ENSMUST00000102840 Ass1-001 protein_coding Mus_musculus 0 1637
ENSMUST00000126474 Ass1-002 processed_transcript Mus_musculus 0 351
ENSMUST00000130195 Ass1-003 processed_transcript Mus_musculus 0 200

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