C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: argininosuccinate synthetase 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000102840 Ass1-001 ENSMUSG00000076441 10090 + 2:31470207-31520672 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000102840
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000102840 2.562±0.48 1.995±0.29 15.218±0.43 8.383±9.14 7.668±2.44 16.042±1.16 2.016±0.19 1012.391±60.53 916.296±774.85 7.433±0.66 0.801±0.19 13.775±2.59 153.113±38.89 17.198±1.67

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000936 CIL_000936_0002 VISTA 2:31199311-31800827
CIL_0005UI CIL_0005UI_0002 CGP 2:31314415-31520672
CIL_0008XQ CIL_0008XQ_0002 VISTA 2:31340644-31941311
CIL_0005UH CIL_0005UH_0002 CGP 2:31470207-31617526

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000050 IEA urea cycle
GO:0004055 IEA argininosuccinate synthase activity
GO:0005524 IEA ATP binding
GO:0005739 IDA mitochondrion
GO:0006526 IEA arginine biosynthetic process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000352480 ASS1-002 protein_coding Homo_sapiens 0 1644
ENST00000372386 ASS1-001 processed_transcript Homo_sapiens 0 645
ENST00000372393 ASS1-003 protein_coding Homo_sapiens 0 1637
ENST00000372394 ASS1-004 protein_coding Homo_sapiens 0 1644
ENST00000402854 ASS1P1-001 processed_pseudogene Homo_sapiens 0 1212
ENST00000418694 RP11-336N8.2-001 processed_pseudogene Homo_sapiens 0 1123
ENST00000421118 ASS1P6-001 processed_pseudogene Homo_sapiens 0 1107
ENST00000422569 ASS1-005 protein_coding Homo_sapiens 0 789
ENST00000423174 ASS1P7-001 processed_pseudogene Homo_sapiens 0 1144
ENST00000435496 ASS1P5-001 processed_pseudogene Homo_sapiens 0 1203
ENST00000439462 ASS1P4-001 processed_pseudogene Homo_sapiens 0 1144
ENST00000439895 ASS1P2-001 processed_pseudogene Homo_sapiens 0 1040
ENST00000441309 ASS1P11-001 processed_pseudogene Homo_sapiens 0 1133
ENST00000443588 ASS1-010 protein_coding Homo_sapiens 0 496
ENST00000452496 ASS1P12-001 processed_pseudogene Homo_sapiens 0 1280
ENST00000467695 ASS1-009 retained_intron Homo_sapiens 0 555
ENST00000470849 ASS1-008 retained_intron Homo_sapiens 0 409
ENST00000492400 ASS1-007 processed_transcript Homo_sapiens 0 409
ENST00000493984 ASS1-006 retained_intron Homo_sapiens 0 255
ENST00000507235 ASS1P10-001 processed_pseudogene Homo_sapiens 0 1171
ENST00000513426 ASS1P9-001 processed_pseudogene Homo_sapiens 0 1254
ENST00000526512 RP11-382M14.1-001 processed_pseudogene Homo_sapiens 0 1192
ENST00000553060 RP11-267D19.2-001 processed_pseudogene Homo_sapiens 0 1273

Loading