C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: argininosuccinate synthase 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000372394 ASS1-004 ENSG00000130707 9606 + 9:130444962-130501274 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; ColonENST00000372394
Transcript ID Colon
ENST00000372394 0.978±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000936 CIL_000936_0001 VISTA 9:130178260-130779710
CIL_0005UI CIL_0005UI_0001 CGP 9:130265882-130501274
CIL_0008XQ CIL_0008XQ_0001 VISTA 9:130365168-130965841
CIL_0005UH CIL_0005UH_0001 CGP 9:130444929-130638352

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000050 IEA urea cycle
GO:0000052 IMP citrulline metabolic process
GO:0000053 IMP argininosuccinate metabolic process
GO:0001101 IEA response to acid
GO:0001822 IEA kidney development
GO:0001889 IEA liver development
GO:0004055 IMP:IEA argininosuccinate synthase activity
GO:0005515 IPI protein binding
GO:0005524 IEA ATP binding
GO:0005634 IEA nucleus
GO:0005737 TAS cytoplasm
GO:0005741 IEA mitochondrial outer membrane
GO:0005764 IEA lysosome
GO:0005783 IEA endoplasmic reticulum
GO:0005829 TAS cytosol
GO:0006526 IEA arginine biosynthetic process
GO:0006531 IMP aspartate metabolic process
GO:0006953 IEA acute-phase response
GO:0007494 IEA midgut development
GO:0007568 IEA aging
GO:0007584 IEA response to nutrient
GO:0010043 IEA response to zinc ion
GO:0010046 IEA response to mycotoxin
GO:0014075 IEA response to amine
GO:0015643 IEA toxic substance binding
GO:0016597 IMP amino acid binding
GO:0032355 IEA response to estradiol
GO:0032496 IEA response to lipopolysaccharide
GO:0034641 TAS cellular nitrogen compound metabolic process
GO:0042493 IEA response to drug
GO:0043005 IEA neuron projection
GO:0043025 IEA neuronal cell body
GO:0043200 IEA response to amino acid
GO:0043204 IEA perikaryon
GO:0043434 IEA response to peptide hormone
GO:0044281 TAS small molecule metabolic process
GO:0044822 IDA poly(A) RNA binding
GO:0045429 IMP positive regulation of nitric oxide biosynthetic process
GO:0048545 IEA response to steroid hormone
GO:0051384 IEA response to glucocorticoid
GO:0060416 IEA response to growth hormone
GO:0060539 IEA diaphragm development
GO:0070062 IDA extracellular vesicular exosome
GO:0070542 IEA response to fatty acid
GO:0070852 IEA cell body fiber
GO:0071222 IEA cellular response to lipopolysaccharide
GO:0071230 IEA cellular response to amino acid stimulus
GO:0071242 IEA cellular response to ammonium ion
GO:0071320 IEA cellular response to cAMP
GO:0071346 IEA cellular response to interferon-gamma
GO:0071356 IEA cellular response to tumor necrosis factor
GO:0071377 IEA cellular response to glucagon stimulus
GO:0071400 IEA cellular response to oleic acid
GO:0071418 IEA cellular response to amine stimulus
GO:0071499 IMP cellular response to laminar fluid shear stress
GO:0071549 IEA cellular response to dexamethasone stimulus
GO:1903038 IMP negative regulation of leukocyte cell-cell adhesion

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000053865 Gm5424-201 protein_coding Mus_musculus 0 1661
ENSMUST00000102840 Ass1-001 protein_coding Mus_musculus 0 1644
ENSMUST00000126474 Ass1-002 processed_transcript Mus_musculus 0 351
ENSMUST00000130195 Ass1-003 processed_transcript Mus_musculus 0 200

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