C-It-Loci: A knowledge database for tissue-enriched loci.
Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main
Transcript Info |
||||||
| Description: | potassium large conductance calcium-activated channel, subfamily M, alpha member 1 | |||||
|---|---|---|---|---|---|---|
| Transcript Accession | Transcript Name | Contained in Gene | Tax ID | Strand | Position | Biotype |
ENST00000372443  |
KCNMA1-010 |
ENSG00000156113 |
9606 | - |
10:76877597-77638369  |
protein_coding |
Expression PatternsNo expression data. |
Conserved Regions | |||
|---|---|---|---|
| Region ID | Sub-Region | Region Type | Position |
| CIL_0007JX | CIL_0007JX_0001 | UCNEbase | 10:74418410-76978156 |
| CIL_0005E6 | CIL_0005E6_0001 | CGP | 10:75431453-77638595 |
| CIL_0008QZ | CIL_0008QZ_0001 | VISTA | 10:76330832-76932117 |
| CIL_0008KV | CIL_0008KV_0001 | VISTA | 10:76764029-77364632 |
| CIL_0008L3 | CIL_0008L3_0001 | VISTA | 10:76772404-77373369 |
| CIL_00087A | CIL_00087A_0001 | VISTA | 10:76800721-77402185 |
| CIL_0004CA | CIL_0004CA_0001 | CGP | 10:76869601-77926526 |
Gene Ontology | ||
|---|---|---|
| GO ID | Evidence Type | GO Description |
| GO:0005216 | IEA | ion channel activity |
| GO:0006811 | IEA | ion transport |
| GO:0006813 | IEA | potassium ion transport |
| GO:0015269 | IEA | calcium-activated potassium channel activity |
| GO:0016020 | IEA | membrane |
| GO:0016021 | IEA | integral component of membrane |
| GO:0055085 | IEA | transmembrane transport |
| GO:0071805 | IEA | potassium ion transmembrane transport |
Homologs | |||||
| ENSEMBL Accession | Gene Name | Biotype | Species | E-Value | Bit Score |
|
ENSMUST00000188210
|
Kcnma1-001 | protein_coding | Mus_musculus | 0 | 6159 |
|
ENSMUST00000179097
|
Kcnma1-208 | protein_coding | Mus_musculus | 0 | 5083 |
|
ENSMUST00000177634
|
Kcnma1-207 | protein_coding | Mus_musculus | 0 | 5040 |
|
ENSMUST00000190044
|
Kcnma1-005 | protein_coding | Mus_musculus | 0 | 4446 |
|
ENSMUST00000190985
|
Kcnma1-004 | nonsense_mediated_decay | Mus_musculus | 0 | 4065 |
|
ENSMUST00000065788
|
Kcnma1-201 | protein_coding | Mus_musculus | 0 | 3661 |
|
ENSMUST00000163322
|
Kcnma1-205 | protein_coding | Mus_musculus | 0 | 3515 |
|
ENSMUST00000112423
|
Kcnma1-204 | protein_coding | Mus_musculus | 0 | 3426 |
|
ENSMUST00000188285
|
Kcnma1-003 | protein_coding | Mus_musculus | 0 | 3280 |
|
ENSMUST00000188991
|
Kcnma1-006 | protein_coding | Mus_musculus | 0 | 3216 |
|
ENSDART00000122557
|
kcnma1a-201 | protein_coding | Danio_rerio | 0 | 2935 |
|
ENSMUST00000172099
|
Kcnma1-206 | protein_coding | Mus_musculus | 0 | 2545 |
|
ENSMUST00000100831
|
Kcnma1-203 | protein_coding | Mus_musculus | 0 | 2545 |
|
ENSMUST00000074983
|
Kcnma1-202 | protein_coding | Mus_musculus | 0 | 2543 |
|
ENSDART00000143200
|
kcnma1a-001 | protein_coding | Danio_rerio | 0 | 2266 |
|
ENSMUST00000179836
|
Kcnma1-209 | protein_coding | Mus_musculus | 0 | 1810 |
|
ENSMUST00000190339
|
Kcnma1-002 | protein_coding | Mus_musculus | 0 | 902 |
|
ENSDART00000082500
|
kcnma1b-201 | protein_coding | Danio_rerio | 0 | 560 |
|
ENSDART00000113062
|
BICD1 (1 of 2)-201 | protein_coding | Danio_rerio | 0.00005 | 55 |
