C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: RAB40A, member RAS oncogene family
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000372633 RAB40A-002 ENSG00000172476 9606 - X:103499750-103502875 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungOvaryPlacentaTestisENST00000372633
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENST00000372633 0.048±0.00 0.269±0.00 0.702±0.00 0.138±0.01 0.245±0.13 0.032±0.00 0.126±0.10 0.192±0.02 0.368±0.36 0.620±0.27 0.191±0.10 0.131±0.03 0.271±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003924 IEA GTPase activity
GO:0005525 IEA GTP binding
GO:0005622 IEA intracellular
GO:0005886 IEA plasma membrane
GO:0006184 IEA GTP catabolic process
GO:0006886 IEA intracellular protein transport
GO:0006913 IEA nucleocytoplasmic transport
GO:0007165 IEA signal transduction
GO:0007264 IEA small GTPase mediated signal transduction
GO:0015031 IEA protein transport
GO:0016020 IEA membrane
GO:0016567 IEA protein ubiquitination
GO:0035556 IEA intracellular signal transduction

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000106107 Rab40b-001 protein_coding Mus_musculus 0 782
ENSMUST00000179998 Rab40c-202 protein_coding Mus_musculus 0 422
ENSMUST00000026826 Rab40c-201 protein_coding Mus_musculus 0 422
ENSMUST00000167018 Rab40c-005 protein_coding Mus_musculus 0 422
ENSMUST00000167626 Rab40c-001 protein_coding Mus_musculus 0 422
ENSMUST00000164738 Rab40c-006 protein_coding Mus_musculus 0 228
ENSMUST00000164982 Rab40c-004 protein_coding Mus_musculus 0 228
ENSMUST00000166146 Rab40c-003 nonsense_mediated_decay Mus_musculus 2e-24 119

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