C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: protein tyrosine phosphatase, receptor type, T
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000373187 PTPRT-002 ENSG00000196090 9606 - 20:42072752-43189733 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; HeartOvaryPlacentaENST00000373187
Transcript ID Heart Ovary Placenta
ENST00000373187 0.067±0.00 0.003±0.00 0.143±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004E5 CIL_0004E5_0001 CGP 20:41402101-43189970
CIL_0004E4 CIL_0004E4_0001 CGP 20:42072752-43464247

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004725 IMP:IEA protein tyrosine phosphatase activity
GO:0005515 IPI:IEA protein binding
GO:0005886 IDA plasma membrane
GO:0006470 IDA:IEA protein dephosphorylation
GO:0007155 NAS cell adhesion
GO:0007156 IDA homophilic cell adhesion via plasma membrane adhesion molecules
GO:0007165 NAS signal transduction
GO:0007169 IMP transmembrane receptor protein tyrosine kinase signaling pathway
GO:0008013 IPI beta-catenin binding
GO:0009986 IDA cell surface
GO:0016020 IEA membrane
GO:0016021 NAS integral component of membrane
GO:0016311 IEA dephosphorylation
GO:0016791 IEA phosphatase activity
GO:0035335 IEA peptidyl-tyrosine dephosphorylation
GO:0045294 IDA alpha-catenin binding
GO:0045295 IDA gamma-catenin binding
GO:0045296 IPI cadherin binding
GO:0070097 IPI delta-catenin binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000109443 Ptprt-003 protein_coding Mus_musculus 0 5834
ENSMUST00000109442 Ptprt-002 protein_coding Mus_musculus 0 2898
ENSMUST00000109445 Ptprt-001 protein_coding Mus_musculus 0 2898
ENSMUST00000109441 Ptprt-004 protein_coding Mus_musculus 0 2887
ENSMUST00000153770 Ptprt-006 processed_transcript Mus_musculus 0 577
ENSMUST00000037974 Ptprm-201 protein_coding Mus_musculus 2.99878e-43 183

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