C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: protein tyrosine phosphatase, receptor type, M
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000037974 Ptprm-201 ENSMUSG00000033278 10090 - 17:66666848-67354459 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000037974
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000037974 5.856±2.37 5.799±0.42 6.268±0.91 5.809±2.16 3.799±1.82 1.587±0.76 13.754±0.88 3.684±0.86 0.430±0.14 25.705±5.65 2.704±0.21 6.026±2.52 4.263±2.91 1.010±0.53

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001937 ISS negative regulation of endothelial cell proliferation
GO:0005001 ISS transmembrane receptor protein tyrosine phosphatase activity
GO:0005737 IEA cytoplasm
GO:0005911 IEA cell-cell junction
GO:0005913 ISS cell-cell adherens junction
GO:0006470 ISS protein dephosphorylation
GO:0007156 ISS homophilic cell adhesion via plasma membrane adhesion molecules
GO:0007165 ISS signal transduction
GO:0010596 ISS negative regulation of endothelial cell migration
GO:0010842 ISS retina layer formation
GO:0016021 IEA integral component of membrane
GO:0016525 ISS negative regulation of angiogenesis
GO:0030027 ISS lamellipodium
GO:0031175 ISS neuron projection development
GO:0031290 ISS retinal ganglion cell axon guidance
GO:0035335 IEA peptidyl-tyrosine dephosphorylation
GO:0042493 ISS response to drug
GO:0042802 IEA identical protein binding
GO:0045296 ISS cadherin binding
GO:0045909 IMP positive regulation of vasodilation
GO:0048471 ISS perinuclear region of cytoplasm

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000148816 PTPRM-001 protein_coding Danio_rerio 0 475
ENSDART00000122795 PTPRM-201 protein_coding Danio_rerio 0 449
ENST00000332175 PTPRM-001 protein_coding Homo_sapiens 0 6002
ENST00000356100 PTPRT-004 protein_coding Homo_sapiens 3.99931e-42 180
ENST00000373184 PTPRT-006 protein_coding Homo_sapiens 2.99878e-43 183
ENST00000373187 PTPRT-002 protein_coding Homo_sapiens 2.99878e-43 183
ENST00000373190 PTPRT-001 protein_coding Homo_sapiens 2.99878e-43 183
ENST00000373193 PTPRT-009 protein_coding Homo_sapiens 3.99931e-42 180
ENST00000373198 PTPRT-005 protein_coding Homo_sapiens 3.99931e-42 180
ENST00000373201 PTPRT-007 protein_coding Homo_sapiens 2.99878e-43 183
ENST00000400053 PTPRM-003 protein_coding Homo_sapiens 0 5747
ENST00000400060 PTPRM-201 protein_coding Homo_sapiens 0 2889
ENST00000577468 PTPRM-010 protein_coding Homo_sapiens 0 725
ENST00000577827 PTPRM-013 retained_intron Homo_sapiens 0 1659
ENST00000578571 PTPRM-006 processed_transcript Homo_sapiens 0 1096
ENST00000578600 PTPRM-005 processed_transcript Homo_sapiens 0 326
ENST00000578698 PTPRM-007 processed_transcript Homo_sapiens 0 521
ENST00000580170 PTPRM-012 protein_coding Homo_sapiens 0 3131
ENST00000580949 PTPRM-017 processed_transcript Homo_sapiens 0 488
ENST00000583153 PTPRM-016 protein_coding Homo_sapiens 0 741
ENST00000583289 PTPRM-008 protein_coding Homo_sapiens 0 745
ENST00000612229 PTPRT-201 protein_coding Homo_sapiens 2.99878e-43 183
ENST00000617474 PTPRT-010 nonsense_mediated_decay Homo_sapiens 9.94922e-44 183
ENST00000618610 PTPRT-202 protein_coding Homo_sapiens 8.99634e-43 180

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