C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: phosphoglycerate kinase 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000373316 PGK1-001 ENSG00000102144 9606 + X:78104174-78129296 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000373316
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000373316 5.529±0.00 6.434±0.00 1.871±0.00 23.499±0.52 5.608±1.09 5.056±3.44 7.589±3.82 14.893±8.95 4.686±0.16 5.862±0.99 8.734±3.15 11.608±4.20 20.540±12.85 4.612±1.80

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001YZ CIL_0001YZ_0001 CGP X:78065188-78139706

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004618 ISS:IEA phosphoglycerate kinase activity
GO:0005515 IPI protein binding
GO:0005524 ISS ATP binding
GO:0005829 TAS cytosol
GO:0005975 TAS carbohydrate metabolic process
GO:0006006 TAS glucose metabolic process
GO:0006094 TAS gluconeogenesis
GO:0006096 IEA glycolytic process
GO:0016020 IDA membrane
GO:0016310 ISS phosphorylation
GO:0030855 IEP epithelial cell differentiation
GO:0044281 TAS small molecule metabolic process
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000085735 Pgk1-rs7-201 protein_coding Mus_musculus 0 2047
ENSMUST00000091117 Gm5537-201 processed_pseudogene Mus_musculus 0 2039
ENSMUST00000081593 Pgk1-001 protein_coding Mus_musculus 0 2015
ENSMUST00000135949 Pgk1-003 nonsense_mediated_decay Mus_musculus 0 1107
ENSMUST00000133559 Pgk1-002 retained_intron Mus_musculus 0 538

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