C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: alpha thalassemia/mental retardation syndrome X-linked homolog (human)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000113573 Atrx-001 ENSMUSG00000031229 10090 - X:105797615-105929397 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000113573
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000113573 4.035±2.82 4.737±0.85 6.249±1.95 19.785±3.66 4.869±2.81 3.144±0.53 0.885±0.09 1.087±0.33 2.771±2.25 5.441±2.19 1.018±0.53 7.455±4.04 3.400±0.11 0.362±0.02

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001YN CIL_0001YN_0002 CGP X:105764279-105929397
CIL_0001YT CIL_0001YT_0002 CGP X:105797615-106011906

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000228 IDA nuclear chromosome
GO:0000792 IDA heterochromatin
GO:0003677 IEA DNA binding
GO:0003682 IDA chromatin binding
GO:0004386 IEA helicase activity
GO:0005515 IPI protein binding
GO:0005524 IEA ATP binding
GO:0005634 IDA nucleus
GO:0005730 IEA nucleolus
GO:0005737 IEA cytoplasm
GO:0005739 IEA mitochondrion
GO:0006200 IEA ATP catabolic process
GO:0006281 IEA DNA repair
GO:0006334 ISS nucleosome assembly
GO:0006336 ISS DNA replication-independent nucleosome assembly
GO:0006338 ISS chromatin remodeling
GO:0006351 IEA transcription, DNA-templated
GO:0007283 IMP spermatogenesis
GO:0008270 IEA zinc ion binding
GO:0010571 IMP positive regulation of nuclear cell cycle DNA replication
GO:0015616 IEA DNA translocase activity
GO:0030330 IMP DNA damage response, signal transduction by p53 class mediator
GO:0030900 IMP forebrain development
GO:0031297 IMP replication fork processing
GO:0031933 IDA telomeric heterochromatin
GO:0032206 IMP positive regulation of telomere maintenance
GO:0035064 IEA methylated histone binding
GO:0042393 IDA histone binding
GO:0045944 IGI positive regulation of transcription from RNA polymerase II promoter
GO:0060009 IMP Sertoli cell development
GO:0070087 IEA chromo shadow domain binding
GO:0070603 ISS SWI/SNF superfamily-type complex
GO:0072520 IMP seminiferous tubule development
GO:0072711 IMP cellular response to hydroxyurea
GO:1901581 IMP negative regulation of telomeric RNA transcription from RNA pol II promoter

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000373344 ATRX-001 protein_coding Homo_sapiens 0 9106
ENST00000395603 ATRX-002 protein_coding Homo_sapiens 0 8390
ENST00000400866 ATRX-007 protein_coding Homo_sapiens 0 822
ENST00000460639 ATRX-006 retained_intron Homo_sapiens 0 405
ENST00000479487 ATRX-008 retained_intron Homo_sapiens 0 307
ENST00000480283 ATRX-003 nonsense_mediated_decay Homo_sapiens 0 8386
ENST00000493470 ATRX-005 protein_coding Homo_sapiens 0 599
ENST00000622960 ATRX-012 protein_coding Homo_sapiens 0 287
ENST00000623242 ATRX-016 nonsense_mediated_decay Homo_sapiens 0 614
ENST00000623316 ATRX-018 nonsense_mediated_decay Homo_sapiens 0 514
ENST00000623321 ATRX-009 protein_coding Homo_sapiens 0 1677
ENST00000623706 ATRX-011 retained_intron Homo_sapiens 0 1712
ENST00000624032 ATRX-004 protein_coding Homo_sapiens 0 1855
ENST00000624166 ATRX-010 protein_coding Homo_sapiens 0 1513
ENST00000624193 ATRX-014 processed_transcript Homo_sapiens 0 200
ENST00000624403 ATRX-017 retained_intron Homo_sapiens 0 616
ENST00000624668 ATRX-013 protein_coding Homo_sapiens 3e-40 169
ENST00000624766 ATRX-019 retained_intron Homo_sapiens 0 728
ENST00000625063 ATRX-015 protein_coding Homo_sapiens 0 797

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