C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: DENN/MADD domain containing 1A
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000373624 DENND1A-002 ENSG00000119522 9606 - 9:123379654-123930107 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartLiverLungOvaryPlacentaTestisENST00000373624
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Liver Lung Ovary Placenta Testis
ENST00000373624 5.402±0.00 3.593±0.00 2.042±0.00 2.921±1.21 1.856±1.04 1.524±0.67 1.256±1.10 0.705±0.00 2.651±0.00 7.956±4.67 7.304±1.12 3.791±1.15

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006WP CIL_0006WP_0001 CGP 9:123356170-123930152
CIL_0006WO CIL_0006WO_0001 CGP 9:123379654-124033301

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding
GO:0005886 IEA plasma membrane
GO:0006897 IMP endocytosis
GO:0015031 IEA protein transport
GO:0017112 IDA Rab guanyl-nucleotide exchange factor activity
GO:0017124 IEA SH3 domain binding
GO:0030054 IEA cell junction
GO:0030136 IDA clathrin-coated vesicle
GO:0030425 IEA dendrite
GO:0030665 IEA clathrin-coated vesicle membrane
GO:0032483 IDA regulation of Rab protein signal transduction
GO:0032851 IDA positive regulation of Rab GTPase activity
GO:0043025 IEA neuronal cell body
GO:0045202 IEA synapse
GO:0048488 IEA synaptic vesicle endocytosis

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000102787 Dennd1a-001 protein_coding Mus_musculus 0 3502
ENSMUST00000140552 Dennd1a-002 nonsense_mediated_decay Mus_musculus 0 1877
ENSMUST00000126889 Dennd1a-009 retained_intron Mus_musculus 0 821
ENSMUST00000150896 Dennd1a-003 nonsense_mediated_decay Mus_musculus 0 725
ENSMUST00000143095 Dennd1a-004 nonsense_mediated_decay Mus_musculus 0 427
ENSMUST00000136460 Dennd1a-010 protein_coding Mus_musculus 0 342
ENSMUST00000130472 Dennd1a-007 protein_coding Mus_musculus 0 272
ENSMUST00000142813 Dennd1a-005 nonsense_mediated_decay Mus_musculus 0 243
ENSMUST00000050372 Crb2-001 protein_coding Mus_musculus 8.40779e-45 187
ENSMUST00000136116 Dennd1a-008 retained_intron Mus_musculus 3e-39 169

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