C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: GDP-mannose pyrophosphorylase A
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000373908 GMPPA-004 ENSG00000144591 9606 + 2:219498906-219506988 protein_coding

Homo sapiens EnsemblGRCh38

Genome
Exciting message
Genes
Structures from Ensembl
Connecting
Transcripts
Structures from Ensembl
Connecting
Powered by Dalliance 0.11.11

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBrainBreastColonKidneyLiverOvaryTestisENST00000373908
Transcript ID Adipose Brain Breast Colon Kidney Liver Ovary Testis
ENST00000373908 1.924±0.00 0.931±0.00 2.475±0.00 1.962±0.00 15.663±0.00 0.689±0.00 5.156±0.00 3.039±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000916 CIL_000916_0001 VISTA 2:219106772-219707284
CIL_0006O1 CIL_0006O1_0001 CGP 2:219434846-219506988
CIL_000415 CIL_000415_0002 CGP 2:219498867-219538772

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005737 IEA cytoplasm
GO:0006488 TAS dolichol-linked oligosaccharide biosynthetic process
GO:0009058 IEA biosynthetic process
GO:0009298 TAS GDP-mannose biosynthetic process
GO:0016779 IEA nucleotidyltransferase activity
GO:0018279 TAS protein N-linked glycosylation via asparagine
GO:0043687 TAS post-translational protein modification
GO:0044267 TAS cellular protein metabolic process
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000037796 Gmppa-001 protein_coding Mus_musculus 0 1646
ENSMUST00000113584 Gmppa-002 protein_coding Mus_musculus 0 1624
ENSMUST00000131545 Gmppa-008 protein_coding Mus_musculus 0 881
ENSMUST00000133418 Gmppa-005 protein_coding Mus_musculus 0 874
ENSMUST00000144874 Gmppa-012 protein_coding Mus_musculus 0 859
ENSMUST00000143730 Gmppa-006 protein_coding Mus_musculus 0 837
ENSMUST00000140287 Gmppa-007 protein_coding Mus_musculus 0 665
ENSMUST00000188097 Gmppa-013 nonsense_mediated_decay Mus_musculus 0 616
ENSMUST00000145166 Gmppa-003 protein_coding Mus_musculus 0 381

Loading