C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: protein kinase C and casein kinase substrate in neurons 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000374043 PACSIN1-003 ENSG00000124507 9606 + 6:34466139-34535229 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBreastKidneyLiverMuscleOvaryPlacentaENST00000374043
Transcript ID Adipose Adrenal Bladder Breast Kidney Liver Muscle Ovary Placenta
ENST00000374043 0.004±0.00 0.093±0.00 0.005±0.00 0.009±0.00 0.029±0.00 0.020±0.01 0.005±0.00 0.086±0.01 0.054±0.05

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004LP CIL_0004LP_0002 CGP 6:34417454-34535231
CIL_0004LR CIL_0004LR_0002 CGP 6:34466061-34556333

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding
GO:0007015 IEA actin filament organization
GO:0048666 IEA neuron development

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000114872 Pacsin1-004 protein_coding Mus_musculus 0 1814
ENSMUST00000045896 Pacsin1-001 protein_coding Mus_musculus 0 1783
ENSMUST00000097360 Pacsin1-002 protein_coding Mus_musculus 0 1742
ENSMUST00000114873 Pacsin1-003 protein_coding Mus_musculus 0 1742
ENSDART00000092415 pacsin2-201 protein_coding Danio_rerio 0 532
ENSDART00000148728 pacsin2-001 protein_coding Danio_rerio 0 532
ENSMUST00000056177 Pacsin2-201 protein_coding Mus_musculus 0 497
ENSMUST00000165095 Pacsin2-202 protein_coding Mus_musculus 0 497
ENSMUST00000171436 Pacsin2-203 protein_coding Mus_musculus 0 497
ENSDART00000150099 pacsin2-002 retained_intron Danio_rerio 2e-35 156
ENSDART00000149305 pacsin2-004 protein_coding Danio_rerio 2e-30 139

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