C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ATP-binding cassette, sub-family C (CFTR/MRP), member 4
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000376887 ABCC4-001 ENSG00000125257 9606 - 13:95019829-95301429 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000376887
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000376887 0.719±0.00 1.661±0.00 0.735±0.00 0.839±0.53 0.378±0.00 2.605±0.42 0.906±0.00 2.679±2.64 0.712±0.61 1.740±0.12 2.247±0.00 3.286±1.23 0.413±0.24 2.011±1.03

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007KH CIL_0007KH_0001 UCNEbase 13:94662058-95022632
CIL_0008M7 CIL_0008M7_0001 VISTA 13:94666210-95267565
CIL_0008LV CIL_0008LV_0001 VISTA 13:94666262-95267596
CIL_0002F4 CIL_0002F4_0001 CGP 13:95019829-95579759

Gene Ontology

GO IDEvidence TypeGO Description
GO:0002576 TAS platelet degranulation
GO:0005524 IEA ATP binding
GO:0005886 IDA plasma membrane
GO:0006200 IEA ATP catabolic process
GO:0006810 IEA transport
GO:0007596 TAS blood coagulation
GO:0008150 ND biological_process
GO:0010033 IEA response to organic substance
GO:0010243 IEA response to organonitrogen compound
GO:0014070 IEA response to organic cyclic compound
GO:0016020 IDA membrane
GO:0016021 IEA integral component of membrane
GO:0016323 IEA basolateral plasma membrane
GO:0016404 NAS 15-hydroxyprostaglandin dehydrogenase (NAD+) activity
GO:0016887 IEA ATPase activity
GO:0030168 TAS platelet activation
GO:0031088 IDA platelet dense granule membrane
GO:0042493 IEA response to drug
GO:0042626 IEA ATPase activity, coupled to transmembrane movement of substances
GO:0048661 IEA positive regulation of smooth muscle cell proliferation
GO:0055085 TAS:IEA transmembrane transport
GO:0055114 NAS oxidation-reduction process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000036554 Abcc4-201 protein_coding Mus_musculus 0 3358
ENSMUST00000166646 Abcc4-202 protein_coding Mus_musculus 0 2929

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