C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: signal transducing adaptor molecule (SH3 domain and ITAM motif) 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000377524 STAM-001 ENSG00000136738 9606 + 10:17644125-17715914 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000377524
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000377524 3.875±0.00 1.526±0.00 5.799±0.82 3.070±0.08 2.466±0.04 3.663±2.72 3.753±1.34 2.298±1.73 2.075±0.39 6.053±5.07 5.748±2.46 5.262±1.46 5.678±1.06

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006BI CIL_0006BI_0001 CGP 10:17589032-17715914
CIL_00046E CIL_00046E_0002 CGP 10:17644125-17800868

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005070 TAS SH3/SH2 adaptor activity
GO:0005515 IPI:IEA protein binding
GO:0005768 IEA endosome
GO:0005829 TAS cytosol
GO:0006886 IEA intracellular protein transport
GO:0007165 TAS signal transduction
GO:0007173 TAS epidermal growth factor receptor signaling pathway
GO:0009967 TAS positive regulation of signal transduction
GO:0016020 IEA membrane
GO:0016197 TAS endosomal transport
GO:0042059 TAS negative regulation of epidermal growth factor receptor signaling pathway
GO:0061024 TAS membrane organization

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000102960 Stam-001 protein_coding Mus_musculus 0 2542
ENSMUST00000028050 Stam-002 protein_coding Mus_musculus 0 1766
ENSMUST00000138989 Stam-005 protein_coding Mus_musculus 0 800
ENSMUST00000121061 Gm12021-001 processed_pseudogene Mus_musculus 0 761
ENSMUST00000156901 Stam-008 processed_transcript Mus_musculus 0 584
ENSMUST00000131734 Stam-007 processed_transcript Mus_musculus 0 484
ENSMUST00000128777 Stam-004 processed_transcript Mus_musculus 0 484
ENSMUST00000140694 Stam-006 processed_transcript Mus_musculus 0 296
ENSMUST00000144944 Stam-003 processed_transcript Mus_musculus 0 246

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