C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: Src homology 2 domain containing adaptor protein B
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000377707 SHB-001 ENSG00000107338 9606 - 9:37919134-38069211 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainColonHeartKidneyLiverLungOvaryPlacentaENST00000377707
Transcript ID Bladder Brain Colon Heart Kidney Liver Lung Ovary Placenta
ENST00000377707 3.856±0.00 16.259±0.00 5.757±0.00 6.793±4.66 5.740±0.00 11.079±6.60 19.158±16.74 16.470±7.02 12.770±1.22

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00081A CIL_00081A_0001 VISTA 9:37738698-38340102
CIL_0006TM CIL_0006TM_0001 CGP 9:37879400-38069211
CIL_0006TL CIL_0006TL_0001 CGP 9:37919134-38398661

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001525 IEA angiogenesis
GO:0005070 TAS SH3/SH2 adaptor activity
GO:0005515 IPI protein binding
GO:0005737 IEA cytoplasm
GO:0005886 IEA plasma membrane
GO:0006915 IEA apoptotic process
GO:0007165 TAS signal transduction
GO:0009967 TAS positive regulation of signal transduction
GO:0030154 IEA cell differentiation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000061986 Shb-001 protein_coding Mus_musculus 0 2030
ENSMUST00000147926 Shb-002 processed_transcript Mus_musculus 0 1055
ENSMUST00000130107 Shb-004 processed_transcript Mus_musculus 0 713

Loading