C-It-Loci: A knowledge database for tissue-enriched loci.
Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main
Transcript Info |
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| Description: | family with sequence similarity 188, member A | |||||
|---|---|---|---|---|---|---|
| Transcript Accession | Transcript Name | Contained in Gene | Tax ID | Strand | Position | Biotype |
ENST00000378036  |
FAM188A-003 |
ENSG00000148481 |
9606 | - |
10:15778170-15818008  |
protein_coding |
Expression PatternsNo expression data. |
Conserved Regions | |||
|---|---|---|---|
| Region ID | Sub-Region | Region Type | Position |
| CIL_00088I | CIL_00088I_0001 | VISTA | 10:15191068-15798325 |
| CIL_0002HM | CIL_0002HM_0001 | CGP | 10:15513949-15860520 |
| CIL_0002HH | CIL_0002HH_0001 | CGP | 10:15778170-16513745 |
Gene Ontology | ||
|---|---|---|
| GO ID | Evidence Type | GO Description |
| GO:0005509 | IEA | calcium ion binding |
Homologs | |||||
| ENSEMBL Accession | Gene Name | Biotype | Species | E-Value | Bit Score |
|
ENSMUST00000028105
|
Fam188a-001 | protein_coding | Mus_musculus | 0 | 1057 |
|
ENSMUST00000154899
|
Fam188a-006 | protein_coding | Mus_musculus | 0 | 1057 |
|
ENSMUST00000129489
|
Fam188a-002 | nonsense_mediated_decay | Mus_musculus | 0 | 1057 |
|
ENSMUST00000155530
|
Fam188a-005 | nonsense_mediated_decay | Mus_musculus | 0 | 1057 |
|
ENSMUST00000137082
|
Fam188a-014 | retained_intron | Mus_musculus | 0 | 889 |
|
ENSMUST00000124603
|
Fam188a-008 | nonsense_mediated_decay | Mus_musculus | 0 | 606 |
|
ENSMUST00000144645
|
Fam188a-004 | nonsense_mediated_decay | Mus_musculus | 0 | 477 |
|
ENSMUST00000135397
|
Fam188a-016 | nonsense_mediated_decay | Mus_musculus | 0 | 449 |
|
ENSMUST00000130225
|
Fam188a-015 | retained_intron | Mus_musculus | 0 | 329 |
|
ENSMUST00000129993
|
Fam188a-007 | processed_transcript | Mus_musculus | 2e-39 | 169 |
